{ "type": "genome", "identifier": "GCF_012911865.1", "organism": "Shewanella salipaludis", "title": "Shewanella salipaludis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012911865.1", "bioproject": "PRJNA224116", "biosample": "SAMN14490328", "wgs_master": "JAAXYH000000000.1", "refseq_category": "reference genome", "taxid": "2723052", "species_taxid": "2723052", "organism_name": "Shewanella salipaludis", "infraspecific_name": "strain=SHSM-M6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1291186v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_012911865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/911/865/GCF_012911865.1_ASM1291186v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4245197", "genome_size_ungapped": "4245197", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012911865.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "3787", "protein_coding_gene_count": "3643", "non_coding_gene_count": "103", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella salipaludis" ], "sample_taxid": [ "2723052" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Siheung" ], "sample_host_location_id": [], "data_size": "1.204 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4245197", "Number of Sequences": "39", "Longest Sequences (bp)": "672451", "N50 (bp)": "241392", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.7", "Number of CDSs": "3762", "Average Protein Length": "323.9", "Coding Ratio (%)": "86.1", "Number of rRNAs": "3", "Number of tRNAs": "85", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella salipaludis", "strain": "strain=SHSM-M6", "accession": "GCA_012911865.1", "taxid": 2723052, "species_taxid": 2723052, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1398, "total_fragments": 1399, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shewanella putrefaciens", "strain": "strain=ATCC 8071", "accession": "GCA_016406325.1", "taxid": 24, "species_taxid": 24, "relation_to_type": "type", "validated": true, "ani": 79.4603, "matched_fragments": 258, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella oncorhynchi", "strain": "strain=S-1", "accession": "GCA_012584455.1", "taxid": 2726434, "species_taxid": 2726434, "relation_to_type": "type", "validated": true, "ani": 79.3603, "matched_fragments": 280, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella hafniensis", "strain": "strain=ATCC BAA-1207", "accession": "GCA_019655335.1", "taxid": 365590, "species_taxid": 365590, "relation_to_type": "type", "validated": true, "ani": 79.3226, "matched_fragments": 310, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella baltica", "strain": "strain=NCTC10735", "accession": "GCA_900456975.1", "taxid": 62322, "species_taxid": 62322, "relation_to_type": "type", "validated": true, "ani": 79.3073, "matched_fragments": 317, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella profunda", "strain": "strain=DSM 15900", "accession": "GCA_023283765.1", "taxid": 254793, "species_taxid": 254793, "relation_to_type": "type", "validated": true, "ani": 79.1518, "matched_fragments": 266, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella putrefaciens", "strain": "strain=NBRC 3908", "accession": "GCA_001591325.1", "taxid": 24, "species_taxid": 24, "relation_to_type": "type", "validated": true, "ani": 79.0898, "matched_fragments": 248, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella cyperi", "strain": "strain=FJAT-53720", "accession": "GCA_017354985.1", "taxid": 2814292, "species_taxid": 2814292, "relation_to_type": "type", "validated": true, "ani": 78.9811, "matched_fragments": 510, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sedimentimangrovi", "strain": "strain=FJAT-52962", "accession": "GCA_017354965.1", "taxid": 2814293, "species_taxid": 2814293, "relation_to_type": "type", "validated": true, "ani": 78.979, "matched_fragments": 501, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella decolorationis", "strain": "strain=S12", "accession": "GCA_000485795.1", "taxid": 256839, "species_taxid": 256839, "relation_to_type": "type", "validated": true, "ani": 78.9774, "matched_fragments": 306, "total_fragments": 1399, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=CCUG 60900", "accession": "GCA_023283775.1", "taxid": 755175, 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