{ "type": "genome", "identifier": "GCF_012911925.1", "organism": "Pseudonocardia xinjiangensis", "title": "Pseudonocardia xinjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kasetsart University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012911925.1", "bioproject": "PRJNA224116", "biosample": "SAMN14542784", "wgs_master": "JAAXKY000000000.1", "refseq_category": "reference genome", "taxid": "75289", "species_taxid": "75289", "organism_name": "Pseudonocardia xinjiangensis", "infraspecific_name": "strain=JCM 11839", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/27", "asm_name": "ASM1291192v1", "asm_submitter": "Kasetsart University", "gbrs_paired_asm": "GCA_012911925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/911/925/GCF_012911925.1_ASM1291192v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7765991", "genome_size_ungapped": "7765991", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "309", "contig_count": "309", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012911925.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7512", "protein_coding_gene_count": "7285", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-27", "dateModified": "2020-04-27", "datePublished": "2020-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudonocardia xinjiangensis" ], "sample_taxid": [ "75289" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang province" ], "sample_host_location_id": [], "data_size": "2.094 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7765991", "Number of Sequences": "309", "Longest Sequences (bp)": "216452", "N50 (bp)": "40869", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.0", "Number of CDSs": "7220", "Average Protein Length": "307.5", "Coding Ratio (%)": "85.8", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudonocardia xinjiangensis", "strain": "strain=JCM 11839", "accession": "GCA_012911925.1", "taxid": 75289, "species_taxid": 75289, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2417, "total_fragments": 2431, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudonocardia alaniniphila", "strain": "strain=Y-16303", "accession": "GCA_022524485.1", "taxid": 75291, "species_taxid": 75291, "relation_to_type": "type", "validated": true, "ani": 85.2557, "matched_fragments": 1806, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia nigra", "strain": "strain=DSM 104088", "accession": "GCA_019396355.1", "taxid": 1921578, "species_taxid": 1921578, "relation_to_type": "type", "validated": true, "ani": 81.798, "matched_fragments": 1204, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia kunmingensis", "strain": "strain=DSM 45301", "accession": "GCA_006716445.1", "taxid": 630975, "species_taxid": 630975, "relation_to_type": "type", "validated": true, "ani": 81.555, "matched_fragments": 1311, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia cypriaca", "strain": "strain=DSM 45511", "accession": "GCA_006717045.1", "taxid": 882449, "species_taxid": 882449, "relation_to_type": "type", "validated": true, "ani": 81.3989, "matched_fragments": 1248, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hierapolitana", "strain": "strain=DSM 45671", "accession": "GCA_007994075.1", "taxid": 1128676, "species_taxid": 1128676, "relation_to_type": "type", "validated": true, "ani": 81.2696, "matched_fragments": 1325, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia petroleophila", "strain": "strain=CGMCC 4.1532", "accession": "GCA_014235185.1", "taxid": 37331, "species_taxid": 37331, "relation_to_type": "type", "validated": true, "ani": 81.0865, "matched_fragments": 1071, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hydrocarbonoxydans", "strain": "strain=NBRC 14498", "accession": "GCA_006539565.1", "taxid": 76726, "species_taxid": 76726, "relation_to_type": "type", "validated": true, "ani": 81.0008, "matched_fragments": 1007, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia oceani", "strain": "strain=KRD185", "accession": "GCA_019263585.2", "taxid": 2792013, "species_taxid": 2792013, "relation_to_type": "type", "validated": true, "ani": 80.9933, "matched_fragments": 1098, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia broussonetiae", "strain": "strain=Gen 01", "accession": "GCA_013155125.1", "taxid": 2736640, "species_taxid": 2736640, "relation_to_type": "type", "validated": true, "ani": 80.8077, "matched_fragments": 1143, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia sulfidoxydans", "strain": "strain=NBRC 16205", "accession": "GCA_007989085.1", "taxid": 54011, "species_taxid": 54011, "relation_to_type": "type", "validated": true, "ani": 79.7, "matched_fragments": 889, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia dioxanivorans", "strain": "strain=CB1190", "accession": "GCA_000196675.2", "taxid": 240495, "species_taxid": 240495, "relation_to_type": "type", "validated": true, "ani": 79.5466, "matched_fragments": 1007, "total_fragments": 2431, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 5.21, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCF_012911925.1", "gtdb_species": "s__Pseudonocardia xinjiangensis", "ani": 100.0, "matched_fragments": 2417, "total_fragments": 2431, "gtdb_taxonomy": 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