{ "type": "genome", "identifier": "GCF_012927305.1", "organism": "Hymenobacter polaris", "title": "Hymenobacter polaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyonggi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012927305.1", "bioproject": "PRJNA224116", "biosample": "SAMN14642395", "wgs_master": "JABBGH000000000.1", "refseq_category": "reference genome", "taxid": "2682546", "species_taxid": "2682546", "organism_name": "Hymenobacter polaris", "infraspecific_name": "strain=RP-2-7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/28", "asm_name": "ASM1292730v1", "asm_submitter": "Kyonggi University", "gbrs_paired_asm": "GCA_012927305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/927/305/GCF_012927305.1_ASM1292730v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5587174", "genome_size_ungapped": "5587077", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012927305.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4742", "protein_coding_gene_count": "4659", "non_coding_gene_count": "52", "pubmed_id": "32730196" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-28", "dateModified": "2020-04-28", "datePublished": "2020-04-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter polaris" ], "sample_taxid": [ "2682546" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Svalbard:Spitsbergen" ], "sample_host_location_id": [], "data_size": "1.547 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5587174", "Number of Sequences": "8", "Longest Sequences (bp)": "2487499", "N50 (bp)": "1470772", "Gap Ratio (%)": "0.001736", "GCcontent (%)": "62.8", "Number of CDSs": "4691", "Average Protein Length": "345.0", "Coding Ratio (%)": "86.9", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter polaris", "strain": "strain=RP-2-7", "accession": "GCA_012927305.1", "taxid": 2682546, "species_taxid": 2682546, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1860, "total_fragments": 1860, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter baengnokdamensis", "strain": "strain=BRD72", "accession": "GCA_008728635.1", "taxid": 2615203, "species_taxid": 2615203, "relation_to_type": "type", "validated": true, "ani": 80.9947, "matched_fragments": 970, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter caeli", "strain": "strain=9A", "accession": "GCA_013294115.1", "taxid": 2735894, "species_taxid": 2735894, "relation_to_type": "type", "validated": true, "ani": 80.9201, "matched_fragments": 1002, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter setariae", "strain": "strain=Fur1", "accession": "GCA_007713685.1", "taxid": 2594794, "species_taxid": 2594794, "relation_to_type": "type", "validated": true, "ani": 80.5402, "matched_fragments": 1069, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter ginkgonis", "strain": "strain=HMF4947", "accession": "GCA_009755225.1", "taxid": 2682976, "species_taxid": 2682976, "relation_to_type": "type", "validated": true, "ani": 80.5141, "matched_fragments": 1054, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter nivis", "strain": "strain=NBRC 111535", "accession": "GCA_003149515.1", "taxid": 1850093, "species_taxid": 1850093, "relation_to_type": "type", "validated": true, "ani": 80.1572, "matched_fragments": 924, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 80.1016, "matched_fragments": 905, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sedentarius", "strain": "strain=DG5B", "accession": "GCA_001507645.1", "taxid": 1411621, "species_taxid": 1411621, "relation_to_type": "type", "validated": true, "ani": 79.5295, "matched_fragments": 794, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacialis", "strain": "strain=CCM 8648", "accession": "GCA_001816165.1", "taxid": 1908236, "species_taxid": 1908236, "relation_to_type": "type", "validated": true, "ani": 79.2522, "matched_fragments": 689, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 78.4474, "matched_fragments": 660, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 78.2733, "matched_fragments": 605, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terrestris", "strain": "strain=P5252", "accession": "GCA_013377905.1", "taxid": 2748310, "species_taxid": 2748310, "relation_to_type": "type", "validated": true, "ani": 78.2459, "matched_fragments": 560, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 78.1987, "matched_fragments": 618, "total_fragments": 1860, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012927305.1", "gtdb_species": 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