{ "type": "genome", "identifier": "GCF_012927405.1", "organism": "Novosphingobium olei", "title": "Novosphingobium olei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyonggi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012927405.1", "bioproject": "PRJNA224116", "biosample": "SAMN14642910", "wgs_master": "JABBGM000000000.1", "refseq_category": "na", "taxid": "2728851", "species_taxid": "2728851", "organism_name": "Novosphingobium olei", "infraspecific_name": "strain=TW-4", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/28", "asm_name": "ASM1292740v1", "asm_submitter": "Kyonggi University", "gbrs_paired_asm": "GCA_012927405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/927/405/GCF_012927405.1_ASM1292740v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4683467", "genome_size_ungapped": "4683370", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012927405.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4449", "protein_coding_gene_count": "4321", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-28", "dateModified": "2020-04-28", "datePublished": "2020-04-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium olei" ], "sample_taxid": [ "2728851" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Suwon" ], "sample_host_location_id": [], "data_size": "1.291 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4683467", "Number of Sequences": "44", "Longest Sequences (bp)": "832641", "N50 (bp)": "405875", "Gap Ratio (%)": "0.002071", "GCcontent (%)": "65.0", "Number of CDSs": "4443", "Average Protein Length": "314.5", "Coding Ratio (%)": "89.5", "Number of rRNAs": "6", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium olei", "strain": "strain=TW-4", "accession": "GCA_012927405.1", "taxid": 2728851, "species_taxid": 2728851, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1537, "total_fragments": 1540, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 87.3951, "matched_fragments": 928, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 85.2058, "matched_fragments": 957, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aromaticivorans", "strain": "strain=DSM 12444", "accession": "GCA_000013325.1", "taxid": 48935, "species_taxid": 48935, "relation_to_type": "type", "validated": true, "ani": 82.5396, "matched_fragments": 694, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=DSM 12447", "accession": "GCA_000807925.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 81.8287, "matched_fragments": 682, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=NBRC 16086", "accession": "GCA_001598575.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 81.7767, "matched_fragments": 673, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 81.5954, "matched_fragments": 672, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium sediminis", "strain": "strain=NBRC 106119", "accession": "GCA_007991615.1", "taxid": 707214, "species_taxid": 707214, "relation_to_type": "type", "validated": true, "ani": 80.7267, "matched_fragments": 657, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium fuchskuhlense", "strain": "strain=FNE08-7", "accession": "GCA_001519075.1", "taxid": 1117702, "species_taxid": 1117702, "relation_to_type": "type", "validated": true, "ani": 80.4078, "matched_fragments": 623, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 78.9156, "matched_fragments": 446, "total_fragments": 1540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", 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"98.63", "min_intra_species_ani": "97.57", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.77", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001014975.1", "gtdb_species": "s__Novosphingobium sp002336885", "ani": 81.6306, "matched_fragments": 674, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_015694345.1", "gtdb_species": "s__Novosphingobium jiangmenense", "ani": 81.6067, "matched_fragments": 671, "total_fragments": 1540, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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