{ "type": "genome", "identifier": "GCF_012932215.1", "organism": "Roseobacter ponti", "title": "Roseobacter ponti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Georg-August-University Goettingen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012932215.1", "bioproject": "PRJNA224116", "biosample": "SAMN14082710", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1891787", "species_taxid": "1891787", "organism_name": "Roseobacter ponti", "infraspecific_name": "strain=DSM 106830", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/29", "asm_name": "ASM1293221v1", "asm_submitter": "Georg-August-University Goettingen", "gbrs_paired_asm": "GCA_012932215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/932/215/GCF_012932215.1_ASM1293221v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3962631", "genome_size_ungapped": "3962631", "gc_percent": "60.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012932215.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3833", "protein_coding_gene_count": "3770", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-29", "dateModified": "2020-04-29", "datePublished": "2020-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseobacter ponti" ], "sample_taxid": [ "1891787" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.111 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3962631", "Number of Sequences": "2", "Longest Sequences (bp)": "3861689", "N50 (bp)": "3861689", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "3799", "Average Protein Length": "314.5", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseobacter ponti", "strain": "strain=DSM 106830", "accession": "GCA_012932215.1", "taxid": 1891787, "species_taxid": 1891787, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1320, "total_fragments": 1320, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseobacter cerasinus", "strain": "strain=AI77", "accession": "GCA_009811755.1", "taxid": 2602289, "species_taxid": 2602289, "relation_to_type": "type", "validated": true, "ani": 78.4199, "matched_fragments": 476, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter denitrificans", "strain": "strain=OCh 114", "accession": "GCA_000014045.1", "taxid": 2434, "species_taxid": 2434, "relation_to_type": "type", "validated": true, "ani": 78.1624, "matched_fragments": 415, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter denitrificans", "strain": "strain=DSM 7001", "accession": "GCA_900113215.1", "taxid": 2434, "species_taxid": 2434, "relation_to_type": "type", "validated": true, "ani": 78.1362, "matched_fragments": 409, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseobacter 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"accession": "GCA_004342065.1", "taxid": 745311, "species_taxid": 745311, "relation_to_type": "type", "validated": true, "ani": 77.3912, "matched_fragments": 251, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter mediterraneus", "strain": "strain=DSM 12244", "accession": "GCA_003054325.1", "taxid": 83219, "species_taxid": 83219, "relation_to_type": "type", "validated": true, "ani": 77.3803, "matched_fragments": 334, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 77.3713, "matched_fragments": 307, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter delicatus", "strain": "strain=DSM 16477", "accession": "GCA_900102535.1", "taxid": 218672, "species_taxid": 218672, "relation_to_type": "type", "validated": true, "ani": 77.3166, "matched_fragments": 320, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2936, "matched_fragments": 347, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 77.2478, "matched_fragments": 233, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 77.1724, "matched_fragments": 283, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter pontiacus", "strain": "strain=DSM 10014", "accession": "GCA_900106935.1", "taxid": 60137, "species_taxid": 60137, "relation_to_type": "type", "validated": true, "ani": 77.1553, "matched_fragments": 313, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 77.0334, "matched_fragments": 209, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 77.018, "matched_fragments": 256, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax halotolerans", "strain": "strain=JCM 10271", "accession": "GCA_900115815.1", "taxid": 93684, "species_taxid": 93684, "relation_to_type": "type", "validated": true, "ani": 76.8293, "matched_fragments": 187, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium sediminis", "strain": "strain=S4J41", "accession": "GCA_004348975.1", "taxid": 2546227, "species_taxid": 2546227, "relation_to_type": "type", "validated": true, "ani": 76.8242, "matched_fragments": 276, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.7441, "matched_fragments": 208, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliishimia ponticola", "strain": "strain=MYP11", "accession": "GCA_004803475.1", "taxid": 2499833, "species_taxid": 2499833, "relation_to_type": "type", "validated": true, "ani": 76.7423, "matched_fragments": 277, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.6633, "matched_fragments": 162, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 76.6631, "matched_fragments": 161, "total_fragments": 1320, "ani_threshold": 95, "status": "below_threshold" }, { 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