{
    "type": "genome",
    "identifier": "GCF_012932965.1",
    "organism": "Thalassotalea algicola",
    "title": "Thalassotalea algicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University at Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_012932965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14675136",
        "wgs_master": "JABBXH000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2716224",
        "species_taxid": "2716224",
        "organism_name": "Thalassotalea algicola",
        "infraspecific_name": "strain=M1531",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/29",
        "asm_name": "ASM1293296v1",
        "asm_submitter": "Shandong University at Weihai",
        "gbrs_paired_asm": "GCA_012932965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/932/965/GCF_012932965.1_ASM1293296v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4061950",
        "genome_size_ungapped": "4061800",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_012932965.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3798",
        "protein_coding_gene_count": "3702",
        "non_coding_gene_count": "79",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-29",
    "dateModified": "2020-04-29",
    "datePublished": "2020-04-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thalassotalea algicola"
        ],
        "sample_taxid": [
            "2716224"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.152 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4061950",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "1008381",
        "N50 (bp)": "705212",
        "Gap Ratio (%)": "0.003693",
        "GCcontent (%)": "39.1",
        "Number of CDSs": "3734",
        "Average Protein Length": "327.1",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "8",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thalassotalea algicola",
                "strain": "strain=M1531",
                "accession": "GCA_012932965.1",
                "taxid": 2716224,
                "species_taxid": 2716224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1346,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thalassotalea piscium",
                "strain": "strain=DSM 26287",
                "accession": "GCA_014207645.1",
                "taxid": 1230533,
                "species_taxid": 1230533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6409,
                "matched_fragments": 173,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Litorilituus sediminis",
                "strain": "strain=JCM 17549",
                "accession": "GCA_004295665.1",
                "taxid": 718192,
                "species_taxid": 718192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3544,
                "matched_fragments": 207,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassotalea agarivorans",
                "strain": "strain=DSM 19706",
                "accession": "GCA_900111755.1",
                "taxid": 349064,
                "species_taxid": 349064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3519,
                "matched_fragments": 136,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassotalea marina",
                "strain": "strain=KCTC 42731",
                "accession": "GCA_014656435.1",
                "taxid": 1673741,
                "species_taxid": 1673741,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.292,
                "matched_fragments": 190,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassotalea profundi",
                "strain": "strain=CGMCC 1.15922",
                "accession": "GCA_014653195.1",
                "taxid": 2036687,
                "species_taxid": 2036687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2305,
                "matched_fragments": 188,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia echini",
                "strain": "strain=A3",
                "accession": "GCA_002843355.2",
                "taxid": 1982103,
                "species_taxid": 1982103,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.675,
                "matched_fragments": 163,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia demingiae",
                "strain": "strain=ACAM 459",
                "accession": "GCA_007954275.1",
                "taxid": 89401,
                "species_taxid": 89401,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5704,
                "matched_fragments": 182,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia ponticola",
                "strain": "strain=OISW-25",
                "accession": "GCA_005885605.1",
                "taxid": 2304625,
                "species_taxid": 2304625,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5695,
                "matched_fragments": 159,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia hornerae",
                "strain": "strain=ACAM 607",
                "accession": "GCA_007954355.1",
                "taxid": 89402,
                "species_taxid": 89402,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4255,
                "matched_fragments": 156,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia piezophila",
                "strain": "strain=ATCC BAA-637",
                "accession": "GCA_000378625.1",
                "taxid": 211668,
                "species_taxid": 211668,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4,
                "matched_fragments": 160,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Colwellia marinimaniae",
                "strain": "strain=MTCD1",
                "accession": "GCA_002207865.1",
                "taxid": 1513592,
                "species_taxid": 1513592,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.047,
                "matched_fragments": 149,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella vesiculosa",
                "strain": "strain=M7",
                "accession": "GCA_021560015.1",
                "taxid": 518738,
                "species_taxid": 518738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9649,
                "matched_fragments": 53,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella ulleungensis",
                "strain": "strain=KCTC 62130",
                "accession": "GCA_023283965.1",
                "taxid": 2282699,
                "species_taxid": 2282699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3035,
                "matched_fragments": 60,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_012932965.1",
                "gtdb_species": "s__Thalassotalea algicola",
                "ani": 100.0,
                "matched_fragments": 1347,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003390395.1",
                "gtdb_species": "s__Thalassotalea euphylliae_C",
                "ani": 79.877,
                "matched_fragments": 349,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003390375.1",
                "gtdb_species": "s__Thalassotalea euphylliae_A",
                "ani": 78.9839,
                "matched_fragments": 328,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003390335.1",
                "gtdb_species": "s__Thalassotalea euphylliae_B",
                "ani": 78.6542,
                "matched_fragments": 312,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014207645.1",
                "gtdb_species": "s__Thalassotalea_B piscium",
                "ani": 78.5933,
                "matched_fragments": 175,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017744155.1",
                "gtdb_species": "s__Thalassotalea sp017744155",
                "ani": 78.3565,
                "matched_fragments": 166,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111755.1",
                "gtdb_species": "s__Thalassotalea_D agarivorans",
                "ani": 78.3495,
                "matched_fragments": 136,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014656435.1",
                "gtdb_species": "s__Thalassotalea_C marina",
                "ani": 78.292,
                "matched_fragments": 190,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014653195.1",
                "gtdb_species": "s__Thalassotalea_B profundi",
                "ani": 78.1923,
                "matched_fragments": 190,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017168195.1",
                "gtdb_species": "s__G2M2-11 sp017168195",
                "ani": 78.004,
                "matched_fragments": 195,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__G2M2-11",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002104515.1",
                "gtdb_species": "s__Cognaticolwellia polaris",
                "ani": 77.7115,
                "matched_fragments": 199,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002104535.1",
                "gtdb_species": "s__Cognaticolwellia sediminilitoris",
                "ani": 77.6954,
                "matched_fragments": 191,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002843355.2",
                "gtdb_species": "s__Colwellia echini",
                "ani": 77.6953,
                "matched_fragments": 162,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018860585.1",
                "gtdb_species": "s__Colwellia sp018860585",
                "ani": 77.6438,
                "matched_fragments": 183,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003333305.1",
                "gtdb_species": "s__Colwellia aromaticivorans",
                "ani": 77.5937,
                "matched_fragments": 160,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013215295.1",
                "gtdb_species": "s__Colwellia_A sp013215295",
                "ani": 77.5523,
                "matched_fragments": 166,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007954275.1",
                "gtdb_species": "s__Colwellia demingiae",
                "ani": 77.5461,
                "matched_fragments": 185,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013216015.1",
                "gtdb_species": "s__JABSOI01 sp013216015",
                "ani": 77.4106,
                "matched_fragments": 145,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__JABSOI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013215655.1",
                "gtdb_species": "s__Colwellia_A sp013215655",
                "ani": 77.3996,
                "matched_fragments": 170,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002733765.1",
                "gtdb_species": "s__Colwellia sp002733765",
                "ani": 77.3364,
                "matched_fragments": 158,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "99.46",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.296,
        "cell_length": 0.141,
        "doubling_h": null,
        "growth_tmp": 29.5,
        "optimum_tmp": 27.5,
        "optimum_ph": 7.25,
        "genome_size": 3584097.5,
        "gc_content": 38.8,
        "coding_genes": 3255.0,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 72.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thalassotalea",
        "algicola"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}