{ "type": "genome", "identifier": "GCF_012933385.1", "organism": "Paenibacillus lemnae", "title": "Paenibacillus lemnae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Tropical Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012933385.1", "bioproject": "PRJNA224116", "biosample": "SAMN14675830", "wgs_master": "JABBPN000000000.1", "refseq_category": "reference genome", "taxid": "1330551", "species_taxid": "1330551", "organism_name": "Paenibacillus lemnae", "infraspecific_name": "strain=L7-75", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/29", "asm_name": "ASM1293338v1", "asm_submitter": "Chinese Academy of Tropical Agricultural Sciences", "gbrs_paired_asm": "GCA_012933385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/933/385/GCF_012933385.1_ASM1293338v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4585858", "genome_size_ungapped": "4585858", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012933385.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4300", "protein_coding_gene_count": "4143", "non_coding_gene_count": "96", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-29", "dateModified": "2020-04-29", "datePublished": "2020-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus lemnae" ], "sample_taxid": [ "1330551" ], "sample_host_organism": [ "Lemna aequinoctialis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Pathumthani" ], "sample_host_location_id": [], "data_size": "1.310 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4585858", "Number of Sequences": "51", "Longest Sequences (bp)": "506585", "N50 (bp)": "184765", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.7", "Number of CDSs": "4238", "Average Protein Length": "315.5", "Coding Ratio (%)": "87.5", "Number of rRNAs": "4", "Number of tRNAs": "76", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus lemnae", "strain": "strain=L7-75", "accession": "GCA_012933385.1", "taxid": 1330551, "species_taxid": 1330551, 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"below_threshold" }, { "organism_name": "Paenibacillus bovis", "strain": "strain=BD3526", "accession": "GCA_001421015.2", "taxid": 1616788, "species_taxid": 1616788, "relation_to_type": "type", "validated": true, "ani": 77.3539, "matched_fragments": 109, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceti", "strain": "strain=L14", "accession": "GCA_003614185.1", "taxid": 1820010, "species_taxid": 1820010, "relation_to_type": "type", "validated": true, "ani": 77.3057, "matched_fragments": 124, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sonchi", "strain": "strain=LMG 24727", "accession": "GCA_016772475.1", "taxid": 373687, "species_taxid": 373687, "relation_to_type": "type", "validated": true, "ani": 77.1786, "matched_fragments": 152, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceti", 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"GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 76.9206, "matched_fragments": 112, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 76.9027, "matched_fragments": 155, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rigui", "strain": "strain=JCM 16352", "accession": "GCA_002234615.1", "taxid": 554312, "species_taxid": 554312, "relation_to_type": "type", "validated": true, "ani": 76.1686, "matched_fragments": 76, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_012933385.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "lemnae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }