{ "type": "genome", "identifier": "GCF_012933505.1", "organism": "Gordonia asplenii", "title": "Gordonia asplenii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Center for Genetic Engineering and Biotechnology (BIOTEC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012933505.1", "bioproject": "PRJNA224116", "biosample": "SAMN14667391", "wgs_master": "JABBNB000000000.1", "refseq_category": "reference genome", "taxid": "2725283", "species_taxid": "2725283", "organism_name": "Gordonia asplenii", "infraspecific_name": "strain=TBRC 11910", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/29", "asm_name": "ASM1293350v1", "asm_submitter": "National Center for Genetic Engineering and Biotechnology (BIOTEC)", "gbrs_paired_asm": "GCA_012933505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/933/505/GCF_012933505.1_ASM1293350v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6646044", "genome_size_ungapped": "6646044", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "133", "contig_count": "133", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012933505.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "5928", "protein_coding_gene_count": "5806", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-29", "dateModified": "2020-04-29", "datePublished": "2020-04-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia asplenii" ], "sample_taxid": [ "2725283" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Nakhon Nayok" ], "sample_host_location_id": [], "data_size": "1.824 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6646044", "Number of Sequences": "133", "Longest Sequences (bp)": "540978", "N50 (bp)": "170801", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "5849", "Average Protein Length": "333.8", "Coding Ratio (%)": "88.1", "Number of rRNAs": "5", "Number of tRNAs": "52", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia asplenii", "strain": "strain=TBRC 11910", "accession": "GCA_012933505.1", "taxid": 2725283, "species_taxid": 2725283, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2165, "total_fragments": 2166, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia effusa", "strain": "strain=NBRC 100432", "accession": "GCA_000241305.2", "taxid": 263908, "species_taxid": 263908, "relation_to_type": "type", "validated": true, "ani": 79.7936, "matched_fragments": 843, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia namibiensis", "strain": "strain=NBRC 108229", "accession": "GCA_000298235.1", "taxid": 168480, "species_taxid": 168480, "relation_to_type": "type", "validated": true, "ani": 79.0446, "matched_fragments": 659, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia paraffinivorans", "strain": "strain=NBRC 108238", "accession": "GCA_000344155.1", "taxid": 175628, "species_taxid": 175628, "relation_to_type": "type", "validated": true, "ani": 79.0397, "matched_fragments": 686, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia alkanivorans", "strain": "strain=NBRC 16433", "accession": "GCA_000225505.1", "taxid": 84096, "species_taxid": 84096, "relation_to_type": "type", "validated": true, "ani": 78.9717, "matched_fragments": 677, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia desulfuricans", "strain": "strain=NBRC 100010", "accession": "GCA_001485495.1", "taxid": 89051, "species_taxid": 89051, "relation_to_type": "type", "validated": true, "ani": 78.9266, "matched_fragments": 712, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia desulfuricans", "strain": "strain=213E", "accession": "GCA_010119475.1", "taxid": 89051, "species_taxid": 89051, "relation_to_type": "type", "validated": true, "ani": 78.9241, "matched_fragments": 714, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia crocea", "strain": "strain=NBRC 107697", "accession": "GCA_009932435.1", "taxid": 589162, "species_taxid": 589162, "relation_to_type": "type", "validated": true, "ani": 78.8936, "matched_fragments": 538, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=FDAARGOS_1594", "accession": "GCA_020731255.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 78.8802, "matched_fragments": 670, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=DSM 43247", "accession": "GCA_000024785.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 78.8663, "matched_fragments": 665, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=NCTC10667", "accession": "GCA_900450805.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 78.8445, "matched_fragments": 675, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rhizosphera", "strain": "strain=NBRC 16068", "accession": "GCA_000298195.1", "taxid": 83341, "species_taxid": 83341, "relation_to_type": "type", "validated": true, "ani": 78.6359, "matched_fragments": 669, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia polyisoprenivorans", "strain": "strain=ATCC BAA-14", "accession": "GCA_012396285.1", "taxid": 84595, "species_taxid": 84595, "relation_to_type": "type", "validated": true, "ani": 78.5573, "matched_fragments": 703, "total_fragments": 2166, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia polyisoprenivorans", "strain": 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