{ "type": "genome", "identifier": "GCF_012986195.1", "organism": "Pseudomonas oryzihabitans", "title": "Pseudomonas oryzihabitans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Technische Universitaet Muenchen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_012986195.1", "bioproject": "PRJNA224116", "biosample": "SAMN14381949", "wgs_master": "JAAQXS000000000.1", "refseq_category": "na", "taxid": "47885", "species_taxid": "47885", "organism_name": "Pseudomonas oryzihabitans", "infraspecific_name": "strain=DSM 6835", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/07", "asm_name": "ASM1298619v1", "asm_submitter": "Technische Universitaet Muenchen", "gbrs_paired_asm": "GCA_012986195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/012/986/195/GCF_012986195.1_ASM1298619v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5038716", "genome_size_ungapped": "5038716", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_012986195.1-RS_2024_03_30", "annotation_date": "2024-03-30", "total_gene_count": "4697", "protein_coding_gene_count": "4589", "non_coding_gene_count": "73", "pubmed_id": "32587583" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-07", "dateModified": "2020-05-07", "datePublished": "2020-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas oryzihabitans" ], "sample_taxid": [ "47885" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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1673, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Pseudomonas rhizoryzae", "strain": "strain=RY24", "accession": "GCA_005250615.1", "taxid": 2571129, "species_taxid": 2571129, "relation_to_type": "type", "validated": true, "ani": 89.7689, "matched_fragments": 1422, "total_fragments": 1673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 80.8362, "matched_fragments": 664, "total_fragments": 1673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas linyingensis", "strain": "strain=LMG 25967", "accession": "GCA_900109175.1", "taxid": 915471, "species_taxid": 915471, "relation_to_type": "type", "validated": true, "ani": 80.8272, "matched_fragments": 616, "total_fragments": 1673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 80.5128, "matched_fragments": 673, "total_fragments": 1673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 80.4867, "matched_fragments": 704, "total_fragments": 1673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 80.1741, "matched_fragments": 645, "total_fragments": 1673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001512295.1", "gtdb_species": "s__Pseudomonas_B sp001512295", "ani": 90.4592, "matched_fragments": 1421, "total_fragments": 1673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005250615.1", "gtdb_species": "s__Pseudomonas_B rhizoryzae", "ani": 89.7757, "matched_fragments": 1421, "total_fragments": 1673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B", "ani_circumscription_radius": 95.0, 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