{ "type": "genome", "identifier": "GCF_013002705.1", "organism": "Nakamurella aerolata", "title": "Nakamurella aerolata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sangji University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013002705.1", "bioproject": "PRJNA224116", "biosample": "SAMN14765627", "wgs_master": "JABEND000000000.1", "refseq_category": "reference genome", "taxid": "1656892", "species_taxid": "1656892", "organism_name": "Nakamurella aerolata", "infraspecific_name": "strain=DB0629", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/09", "asm_name": "ASM1300270v1", "asm_submitter": "Sangji University", "gbrs_paired_asm": "GCA_013002705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/002/705/GCF_013002705.1_ASM1300270v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4347333", "genome_size_ungapped": "4347235", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013002705.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3724", "protein_coding_gene_count": "3600", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-09", "dateModified": "2020-05-09", "datePublished": "2020-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Nakamurella aerolata" ], "sample_taxid": [ "1656892" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "1.170 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.37, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4347333", "Number of Sequences": "22", "Longest Sequences (bp)": "757517", "N50 (bp)": "368684", "Gap Ratio (%)": "0.002254", "GCcontent (%)": "69.5", "Number of CDSs": "3775", "Average Protein Length": "341.1", "Coding Ratio (%)": "88.9", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nakamurella aerolata", "strain": "strain=DB0629", "accession": "GCA_013002705.1", "taxid": 1656892, "species_taxid": 1656892, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1437, "total_fragments": 1440, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nakamurella lactea", "strain": "strain=DSM 19367", "accession": "GCA_000426645.1", "taxid": 459515, "species_taxid": 459515, "relation_to_type": "type", "validated": true, "ani": 78.9043, "matched_fragments": 630, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nakamurella multipartita", "strain": "strain=DSM 44233", "accession": "GCA_000024365.1", "taxid": 53461, "species_taxid": 53461, "relation_to_type": "type", "validated": true, "ani": 77.8579, "matched_fragments": 469, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nakamurella leprariae", "strain": "strain=YIM 132084", "accession": "GCA_016918035.1", "taxid": 2803911, "species_taxid": 2803911, "relation_to_type": "type", "validated": true, "ani": 77.7601, "matched_fragments": 410, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nakamurella 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"accession": "GCA_003635025.1", "taxid": 455193, "species_taxid": 455193, "relation_to_type": "type", "validated": true, "ani": 76.8351, "matched_fragments": 391, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsukamurella pulmonis", "strain": "strain=DSM 44142", "accession": "GCA_900103175.1", "taxid": 47312, "species_taxid": 47312, "relation_to_type": "type", "validated": true, "ani": 76.6087, "matched_fragments": 276, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix tamanrassetensis", "strain": "strain=CECT 8640", "accession": "GCA_014203665.1", "taxid": 1051531, "species_taxid": 1051531, "relation_to_type": "type", "validated": true, "ani": 76.5458, "matched_fragments": 376, "total_fragments": 1440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsukamurella pulmonis", "strain": "strain=NCTC13230", "accession": "GCA_900460155.1", "taxid": 47312, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000024365.1", "gtdb_species": "s__Nakamurella multipartita", "ani": 77.8952, "matched_fragments": 464, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Nakamurellaceae;g__Nakamurella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009707545.1", "gtdb_species": "s__Nakamurella sp009707545", "ani": 77.8871, "matched_fragments": 485, "total_fragments": 1440, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Nakamurellaceae;g__Nakamurella", "ani_circumscription_radius": 95.0, 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