{
    "type": "genome",
    "identifier": "GCF_013003915.1",
    "organism": "Telluria aromaticivorans",
    "title": "Telluria aromaticivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Seoul National University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013003915.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14571933",
        "wgs_master": "JABAIV000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2725995",
        "species_taxid": "2725995",
        "organism_name": "Telluria aromaticivorans",
        "infraspecific_name": "strain=ML15P13",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/09",
        "asm_name": "ASM1300391v1",
        "asm_submitter": "Seoul National University",
        "gbrs_paired_asm": "GCA_013003915.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/003/915/GCF_013003915.1_ASM1300391v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5232923",
        "genome_size_ungapped": "5232729",
        "gc_percent": "64.500000",
        "replicon_count": "0",
        "scaffold_count": "24",
        "contig_count": "24",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013003915.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4652",
        "protein_coding_gene_count": "4539",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-09",
    "dateModified": "2020-05-09",
    "datePublished": "2020-05-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Telluria aromaticivorans"
        ],
        "sample_taxid": [
            "2725995"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Norway:Svalbard"
        ],
        "sample_host_location_id": [],
        "data_size": "1.444 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5232923",
        "Number of Sequences": "24",
        "Longest Sequences (bp)": "1191960",
        "N50 (bp)": "748145",
        "Gap Ratio (%)": "0.003707",
        "GCcontent (%)": "64.5",
        "Number of CDSs": "4577",
        "Average Protein Length": "337.1",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Massilia aromaticivorans",
                "strain": "strain=ML15P13",
                "accession": "GCA_013003915.1",
                "taxid": 2725995,
                "species_taxid": 2725995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1728,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Massilia yuzhufengensis",
                "strain": "strain=CGMCC 1.12041",
                "accession": "GCA_900112225.1",
                "taxid": 1164594,
                "species_taxid": 1164594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.4743,
                "matched_fragments": 1344,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia alkalitolerans",
                "strain": "strain=DSM 17462",
                "accession": "GCA_000427785.1",
                "taxid": 286638,
                "species_taxid": 286638,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6974,
                "matched_fragments": 1323,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia agri",
                "strain": "strain=JCM 31661",
                "accession": "GCA_024753255.1",
                "taxid": 1886785,
                "species_taxid": 1886785,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.113,
                "matched_fragments": 1327,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia niastensis",
                "strain": "strain=DSM 21313",
                "accession": "GCA_000382345.1",
                "taxid": 544911,
                "species_taxid": 544911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0643,
                "matched_fragments": 1229,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia timonae",
                "strain": "strain=CCUG 45783",
                "accession": "GCA_000315425.1",
                "taxid": 47229,
                "species_taxid": 47229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2203,
                "matched_fragments": 1214,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia oculi",
                "strain": "strain=CCUG 43427",
                "accession": "GCA_003143515.1",
                "taxid": 945844,
                "species_taxid": 945844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.047,
                "matched_fragments": 1177,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia norwichensis",
                "strain": "strain=LMG 28164",
                "accession": "GCA_024753245.1",
                "taxid": 1442366,
                "species_taxid": 1442366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9066,
                "matched_fragments": 1136,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia aurea",
                "strain": "strain=JCM 13879",
                "accession": "GCA_024753205.1",
                "taxid": 373040,
                "species_taxid": 373040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6871,
                "matched_fragments": 1036,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia forsythiae",
                "strain": "strain=GN2-R2",
                "accession": "GCA_012849555.1",
                "taxid": 2728020,
                "species_taxid": 2728020,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6558,
                "matched_fragments": 1105,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia cavernae",
                "strain": "strain=K1S02-61",
                "accession": "GCA_003590855.1",
                "taxid": 2320864,
                "species_taxid": 2320864,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0977,
                "matched_fragments": 852,
                "total_fragments": 1732,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013003915.1",
                "gtdb_species": "s__Massilia aromaticivorans",
                "ani": 100.0,
                "matched_fragments": 1728,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900112225.1",
                "gtdb_species": "s__Massilia yuzhufengensis",
                "ani": 87.4627,
                "matched_fragments": 1345,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000427785.1",
                "gtdb_species": "s__Massilia alkalitolerans",
                "ani": 86.7173,
                "matched_fragments": 1320,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.93",
                "min_intra_species_ani": "95.88",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_902506415.1",
                "gtdb_species": "s__Massilia sp902506415",
                "ani": 86.6876,
                "matched_fragments": 1352,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015277795.1",
                "gtdb_species": "s__Massilia sp015277795",
                "ani": 86.5064,
                "matched_fragments": 1295,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000740675.1",
                "gtdb_species": "s__Massilia sp000740675",
                "ani": 86.3749,
                "matched_fragments": 1265,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003520365.1",
                "gtdb_species": "s__Massilia sp003520365",
                "ani": 84.3596,
                "matched_fragments": 693,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000315425.1",
                "gtdb_species": "s__Massilia timonae",
                "ani": 84.2154,
                "matched_fragments": 1214,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001424165.1",
                "gtdb_species": "s__Massilia sp001424165",
                "ani": 83.4962,
                "matched_fragments": 1133,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004798585.1",
                "gtdb_species": "s__Massilia sp004798585",
                "ani": 83.2422,
                "matched_fragments": 1163,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015101885.1",
                "gtdb_species": "s__Massilia sp015101885",
                "ani": 83.2272,
                "matched_fragments": 1126,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014171595.1",
                "gtdb_species": "s__Massilia sp014171595",
                "ani": 83.0849,
                "matched_fragments": 1119,
                "total_fragments": 1732,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Massilia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Telluria",
        "aromaticivorans"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}