{ "type": "genome", "identifier": "GCF_013004695.1", "organism": "Promicromonospora citrea", "title": "Promicromonospora citrea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013004695.1", "bioproject": "PRJNA224116", "biosample": "SAMN14517829", "wgs_master": "JABEMG000000000.1", "refseq_category": "na", "taxid": "43677", "species_taxid": "43677", "organism_name": "Promicromonospora citrea", "infraspecific_name": "strain=ATCC 15908", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/10", "asm_name": "ASM1300469v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_013004695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/004/695/GCF_013004695.1_ASM1300469v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4962797", "genome_size_ungapped": "4962797", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "290", "contig_count": "290", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013004695.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "4731", "protein_coding_gene_count": "4532", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-10", "dateModified": "2020-05-10", "datePublished": "2020-05-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Promicromonospora citrea" ], "sample_taxid": [ "43677" ], "sample_host_organism": [ "environmental" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"status": "below_threshold" }, { "organism_name": "Promicromonospora soli", "strain": "strain=CGMCC 4.7398", "accession": "GCA_014653785.1", "taxid": 2035533, "species_taxid": 2035533, "relation_to_type": "type", "validated": true, "ani": 84.2956, "matched_fragments": 1014, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora umidemergens", "strain": "strain=DSM 22081", "accession": "GCA_024171995.1", "taxid": 629679, "species_taxid": 629679, "relation_to_type": "type", "validated": true, "ani": 84.1835, "matched_fragments": 1130, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myceligenerans indicum", "strain": "strain=I2", "accession": "GCA_016742955.1", "taxid": 2593663, "species_taxid": 2593663, "relation_to_type": "type", "validated": true, "ani": 79.8388, "matched_fragments": 725, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium arenosum", "strain": "strain=KCTC 49039", "accession": "GCA_014837295.1", "taxid": 2708133, "species_taxid": 2708133, "relation_to_type": "type", "validated": true, "ani": 79.3204, "matched_fragments": 625, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 79.1359, "matched_fragments": 611, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 79.0354, "matched_fragments": 632, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter keddieii", "strain": "strain=DSM 10542", "accession": "GCA_000024925.1", "taxid": 60920, "species_taxid": 60920, "relation_to_type": "type", "validated": true, "ani": 78.4168, "matched_fragments": 541, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 78.3704, "matched_fragments": 600, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 78.2797, "matched_fragments": 579, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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}, { "accession": "GCF_000515355.1", "gtdb_species": "s__Promicromonospora kroppenstedtii", "ani": 84.7781, "matched_fragments": 1082, "total_fragments": 1508, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.09", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003058225.1", "gtdb_species": "s__Promicromonospora sp003058225", "ani": 84.7184, "matched_fragments": 1139, "total_fragments": 1508, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Promicromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "98.27", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" 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"psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.5, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.5, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Promicromonospora", "citrea" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }