{ "type": "genome", "identifier": "GCF_013009345.1", "organism": "Acinetobacter geminorum", "title": "Acinetobacter geminorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University Clinics Tuebingen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013009345.1", "bioproject": "PRJNA224116", "biosample": "SAMN14734441", "wgs_master": "JABELE000000000.1", "refseq_category": "reference genome", "taxid": "2730922", "species_taxid": "2730922", "organism_name": "Acinetobacter geminorum", "infraspecific_name": "strain=J00019", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/11", "asm_name": "ASM1300934v1", "asm_submitter": "University Clinics Tuebingen", "gbrs_paired_asm": "GCA_013009345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/009/345/GCF_013009345.1_ASM1300934v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3800356", "genome_size_ungapped": "3799965", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "88", "contig_count": "88", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013009345.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3778", "protein_coding_gene_count": "3581", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-11", "dateModified": "2020-05-11", "datePublished": "2020-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter geminorum" ], "sample_taxid": [ "2730922" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "unknown" ], 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"status": "below_threshold" }, { "organism_name": "Acinetobacter lactucae", "strain": "strain=NRRL B-41902", "accession": "GCA_001605885.1", "taxid": 1785128, "species_taxid": 1785128, "relation_to_type": "type", "validated": true, "ani": 93.0581, "matched_fragments": 1033, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 88.8688, "matched_fragments": 1023, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 88.8111, "matched_fragments": 1027, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 80.5669, "matched_fragments": 477, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 80.2367, "matched_fragments": 481, "total_fragments": 1238, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013009345.1", "gtdb_species": "s__Acinetobacter sp013009345", "ani": 100.0, "matched_fragments": 1236, "total_fragments": 1238, "gtdb_taxonomy": 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