{
    "type": "genome",
    "identifier": "GCF_013009555.1",
    "organism": "Phocaeicola dorei",
    "title": "Phocaeicola dorei",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Florida",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013009555.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13293921",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "357276",
        "species_taxid": "357276",
        "organism_name": "Phocaeicola dorei",
        "infraspecific_name": "strain=DSM 17855",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/11",
        "asm_name": "ASM1300955v1",
        "asm_submitter": "University of Florida",
        "gbrs_paired_asm": "GCA_013009555.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/009/555/GCF_013009555.1_ASM1300955v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5625488",
        "genome_size_ungapped": "5625488",
        "gc_percent": "42.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013009555.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "4644",
        "protein_coding_gene_count": "4398",
        "non_coding_gene_count": "104",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-11",
    "dateModified": "2020-05-11",
    "datePublished": "2020-05-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phocaeicola dorei"
        ],
        "sample_taxid": [
            "357276"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.594 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5625488",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5625488",
        "N50 (bp)": "5625488",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.1",
        "Number of CDSs": "4521",
        "Average Protein Length": "366.8",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "21",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "validated": true,
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                "ani_threshold": 95,
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                "status": "inconclusive"
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                "species_taxid": 821,
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            {
                "organism_name": "Phocaeicola vulgatus",
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                "relation_to_type": "type",
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                "ani": 95.223,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Phocaeicola sartorii",
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                "accession": "GCA_024622025.1",
                "taxid": 671267,
                "species_taxid": 671267,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1152,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides eggerthii",
                "strain": "strain=DSM 20697",
                "accession": "GCA_025146565.1",
                "taxid": 28111,
                "species_taxid": 28111,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7699,
                "matched_fragments": 223,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecalis",
                "strain": "strain=FXJYN30E22",
                "accession": "GCA_021730445.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides thetaiotaomicron",
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                "accession": "GCA_022453665.1",
                "taxid": 818,
                "species_taxid": 818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6218,
                "matched_fragments": 247,
                "total_fragments": 1875,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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            "strain_heterogeneity": 0.0
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                "matched_fragments": 1869,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.359,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "95.43",
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                "status": "-"
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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    },
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}