{ "type": "genome", "identifier": "GCF_013085345.1", "organism": "Isoptericola sediminis", "title": "Isoptericola sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "JNT University Hyderabad", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013085345.1", "bioproject": "PRJNA224116", "biosample": "SAMN14839391", "wgs_master": "JABFAJ000000000.1", "refseq_category": "reference genome", "taxid": "2733572", "species_taxid": "2733572", "organism_name": "Isoptericola sediminis", "infraspecific_name": "strain=JC619", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/13", "asm_name": "ASM1308534v1", "asm_submitter": "JNT University Hyderabad", "gbrs_paired_asm": "GCA_013085345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/085/345/GCF_013085345.1_ASM1308534v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3243095", "genome_size_ungapped": "3243095", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013085345.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "3055", "protein_coding_gene_count": "2977", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-13", "dateModified": "2020-05-13", "datePublished": "2020-05-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Isoptericola sediminis" ], "sample_taxid": [ "2733572" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Chilika lagoon" ], "sample_host_location_id": [], "data_size": "0.856 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3243095", "Number of Sequences": "35", "Longest Sequences (bp)": "505511", "N50 (bp)": "163608", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.0", "Number of CDSs": "3017", "Average Protein Length": "330.1", "Coding Ratio (%)": "92.1", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Isoptericola sediminis", "strain": "strain=JC619", "accession": "GCA_013085345.1", "taxid": 2733572, "species_taxid": 2733572, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1063, "total_fragments": 1067, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Isoptericola chiayiensis", "strain": "strain=KCTC 19740", "accession": "GCA_013149805.1", "taxid": 579446, "species_taxid": 579446, "relation_to_type": "type", "validated": true, "ani": 84.3504, "matched_fragments": 818, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Isoptericola jiangsuensis", "strain": "strain=DSM 21863", "accession": "GCA_002563715.1", "taxid": 548579, "species_taxid": 548579, "relation_to_type": "type", "validated": true, "ani": 82.5633, "matched_fragments": 765, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Isoptericola dokdonensis", "strain": "strain=DS-3", "accession": "GCA_001636295.1", "taxid": 372663, "species_taxid": 372663, "relation_to_type": "type", "validated": true, "ani": 82.4023, "matched_fragments": 743, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora citrea", "strain": "strain=ATCC 15908", "accession": "GCA_013004695.1", "taxid": 43677, "species_taxid": 43677, "relation_to_type": "type", "validated": true, "ani": 79.8323, "matched_fragments": 557, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora sukumoe", "strain": "strain=DSM 44121", "accession": "GCA_014137995.1", "taxid": 88382, "species_taxid": 88382, "relation_to_type": "type", "validated": true, "ani": 79.6711, "matched_fragments": 613, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4574, "matched_fragments": 566, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4389, "matched_fragments": 571, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 79.3734, "matched_fragments": 498, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 79.2758, "matched_fragments": 494, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia enterophila", "strain": "strain=DSM 43852", "accession": "GCA_001692445.1", "taxid": 43678, "species_taxid": 43678, "relation_to_type": "type", "validated": true, "ani": 79.1826, "matched_fragments": 495, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myceligenerans indicum", "strain": "strain=I2", "accession": "GCA_016742955.1", "taxid": 2593663, "species_taxid": 2593663, "relation_to_type": "type", "validated": true, "ani": 79.1724, "matched_fragments": 513, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora umidemergens", "strain": "strain=DSM 22081", "accession": "GCA_024171995.1", "taxid": 629679, "species_taxid": 629679, "relation_to_type": "type", "validated": true, "ani": 79.1435, "matched_fragments": 561, "total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": 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"total_fragments": 1067, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013085345.1", "gtdb_species": "s__Isoptericola sediminis", "ani": 100.0, "matched_fragments": 1063, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013149805.1", "gtdb_species": "s__Isoptericola chiayiensis", "ani": 84.3629, "matched_fragments": 817, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001636295.1", "gtdb_species": "s__Isoptericola dokdonensis", "ani": 82.3891, "matched_fragments": 744, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013149785.1", "gtdb_species": "s__Isoptericola halotolerans", "ani": 82.3365, "matched_fragments": 740, "total_fragments": 1067, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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