{ "type": "genome", "identifier": "GCF_013087555.1", "organism": "Mucilaginibacter humi", "title": "Mucilaginibacter humi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CHUNG ANG UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013087555.1", "bioproject": "PRJNA224116", "biosample": "SAMN14825644", "wgs_master": "JABFCR000000000.1", "refseq_category": "reference genome", "taxid": "2732510", "species_taxid": "2732510", "organism_name": "Mucilaginibacter humi", "infraspecific_name": "strain=S1162", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/14", "asm_name": "ASM1308755v1", "asm_submitter": "CHUNG ANG UNIVERSITY", "gbrs_paired_asm": "GCA_013087555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/087/555/GCF_013087555.1_ASM1308755v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2472934", "genome_size_ungapped": "2472934", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013087555.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3547", "protein_coding_gene_count": "3051", "non_coding_gene_count": "29", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-14", "dateModified": "2020-05-14", "datePublished": "2020-05-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter humi" ], "sample_taxid": [ "2732510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], 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"conclusive" }, { "organism_name": "Mucilaginibacter corticis", "strain": "strain=MAH-19", "accession": "GCA_007558865.1", "taxid": 2597670, "species_taxid": 2597670, "relation_to_type": "type", "validated": true, "ani": 80.1771, "matched_fragments": 371, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter frigoritolerans", "strain": "strain=ATCC BAA-1854", "accession": "GCA_007830615.1", "taxid": 652788, "species_taxid": 652788, "relation_to_type": "type", "validated": true, "ani": 78.1996, "matched_fragments": 137, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 78.0945, "matched_fragments": 175, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter terrigena", "strain": "strain=17JY9-4", "accession": "GCA_004168255.1", "taxid": 2492395, "species_taxid": 2492395, "relation_to_type": "type", "validated": true, "ani": 78.0245, "matched_fragments": 175, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 77.9358, "matched_fragments": 167, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 77.7854, "matched_fragments": 184, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter boryungensis", "strain": "strain=KCTC 23157", "accession": "GCA_015221995.1", "taxid": 768480, "species_taxid": 768480, "relation_to_type": "type", "validated": true, "ani": 77.6999, "matched_fragments": 136, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5202, "matched_fragments": 170, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.504, "matched_fragments": 164, "total_fragments": 784, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pedocola", "strain": "strain=TBZ30", 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"N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002013915.1", "gtdb_species": "s__Mucilaginibacter pedocola", "ani": 77.466, "matched_fragments": 155, "total_fragments": 784, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110415.1", "gtdb_species": "s__Mucilaginibacter sp900110415", "ani": 77.352, "matched_fragments": 200, "total_fragments": 784, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.382, "cell_length": 0.217, "doubling_h": null, "growth_tmp": 25.111, "optimum_tmp": 26.0, "optimum_ph": 6.449, "genome_size": 6405217.25, "gc_content": 43.045, "coding_genes": 5407.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.269, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.73, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "humi" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }