{
    "type": "genome",
    "identifier": "GCF_013087605.1",
    "organism": "Rhizobium indigoferae",
    "title": "Rhizobium indigoferae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013087605.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14341972",
        "wgs_master": "JABFCO000000000.1",
        "refseq_category": "na",
        "taxid": "158891",
        "species_taxid": "158891",
        "organism_name": "Rhizobium indigoferae",
        "infraspecific_name": "strain=CCBAU 71042",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/14",
        "asm_name": "ASM1308760v1",
        "asm_submitter": "WFCC-MRCEN World Data Centre for Microoganisms(WDCM)",
        "gbrs_paired_asm": "GCA_013087605.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/087/605/GCF_013087605.1_ASM1308760v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7498874",
        "genome_size_ungapped": "7498842",
        "gc_percent": "60.500000",
        "replicon_count": "0",
        "scaffold_count": "90",
        "contig_count": "90",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013087605.1-RS_2024_09_29",
        "annotation_date": "2024-09-29",
        "total_gene_count": "7330",
        "protein_coding_gene_count": "6999",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-14",
    "dateModified": "2020-05-14",
    "datePublished": "2020-05-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhizobium indigoferae"
        ],
        "sample_taxid": [
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        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Qinghai"
        ],
        "sample_host_location_id": [],
        "data_size": "2.101 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "7498874",
        "Number of Sequences": "90",
        "Longest Sequences (bp)": "547349",
        "N50 (bp)": "304730",
        "Gap Ratio (%)": "0.000427",
        "GCcontent (%)": "60.7",
        "Number of CDSs": "7209",
        "Average Protein Length": "298.1",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            },
            {
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                "species_taxid": 384,
                "relation_to_type": "suspected-type",
                "validated": true,
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            },
            {
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            },
            {
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                "ani": 97.7033,
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                "total_fragments": 2457,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
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                "ani": 93.2864,
                "matched_fragments": 2006,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium indicum",
                "strain": "strain=JKLM 12A2",
                "accession": "GCA_005862305.2",
                "taxid": 2583231,
                "species_taxid": 2583231,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_013087515.1",
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                "species_taxid": 1535242,
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                "matched_fragments": 1912,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium changzhiense",
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            {
                "organism_name": "Rhizobium redzepovicii",
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                "species_taxid": 2867518,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            {
                "organism_name": "Rhizobium croatiense",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Rhizobium mongolense subsp. loessense",
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                "accession": "GCA_900099775.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium dioscoreae",
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                "accession": "GCA_009176305.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Shinella sumterensis",
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        ],
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}