{
    "type": "genome",
    "identifier": "GCF_013090115.1",
    "organism": "Flagellimonas amphidinii",
    "title": "Flagellimonas amphidinii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shantou University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013090115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14731719",
        "wgs_master": "JABFNN000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2735167",
        "species_taxid": "2735167",
        "organism_name": "Flagellimonas amphidinii",
        "infraspecific_name": "strain=LMIT004",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/15",
        "asm_name": "ASM1309011v1",
        "asm_submitter": "Shantou University",
        "gbrs_paired_asm": "GCA_013090115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/090/115/GCF_013090115.1_ASM1309011v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3871069",
        "genome_size_ungapped": "3871069",
        "gc_percent": "39.000000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-03",
        "total_gene_count": "3448",
        "protein_coding_gene_count": "3380",
        "non_coding_gene_count": "46",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-15",
    "dateModified": "2020-05-15",
    "datePublished": "2020-05-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Flagellimonas amphidinii"
        ],
        "sample_taxid": [
            "2735167"
        ],
        "sample_host_organism": [
            "Amphidinium carterae"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.097 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3871069",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "678737",
        "N50 (bp)": "285726",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.9",
        "Number of CDSs": "3344",
        "Average Protein Length": "349.6",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Muricauda amphidinii",
                "strain": "strain=LMIT004",
                "accession": "GCA_013090115.1",
                "taxid": 2735167,
                "species_taxid": 2735167,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1267,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Muricauda nanhaiensis",
                "strain": "strain=SM1704",
                "accession": "GCA_003382275.1",
                "taxid": 2292706,
                "species_taxid": 2292706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3798,
                "matched_fragments": 568,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda olearia",
                "strain": "strain=CL-SS4",
                "accession": "GCA_009184425.1",
                "taxid": 552546,
                "species_taxid": 552546,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1546,
                "matched_fragments": 384,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda parva",
                "strain": "strain=DSM 25885",
                "accession": "GCA_900215465.1",
                "taxid": 1247520,
                "species_taxid": 1247520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0729,
                "matched_fragments": 401,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda alvinocaridis",
                "strain": "strain=SCR12",
                "accession": "GCA_004916895.1",
                "taxid": 2530200,
                "species_taxid": 2530200,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9693,
                "matched_fragments": 374,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda algicola",
                "strain": "strain=AsT0115",
                "accession": "GCA_005937185.1",
                "taxid": 2583815,
                "species_taxid": 2583815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9674,
                "matched_fragments": 343,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda onchidii",
                "strain": "strain=XY-359",
                "accession": "GCA_004804315.1",
                "taxid": 2562684,
                "species_taxid": 2562684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9497,
                "matched_fragments": 344,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda flava",
                "strain": "strain=DSM 22638",
                "accession": "GCA_900129665.1",
                "taxid": 570519,
                "species_taxid": 570519,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.845,
                "matched_fragments": 345,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda zhangzhouensis",
                "strain": "strain=CGMCC 1.11028",
                "accession": "GCA_900102925.1",
                "taxid": 1073328,
                "species_taxid": 1073328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.774,
                "matched_fragments": 341,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda zhangzhouensis",
                "strain": "strain=DSM 25030",
                "accession": "GCA_900106825.1",
                "taxid": 1073328,
                "species_taxid": 1073328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7601,
                "matched_fragments": 352,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda beolgyonensis",
                "strain": "strain=KCTC 23501",
                "accession": "GCA_003992615.1",
                "taxid": 864064,
                "species_taxid": 864064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6801,
                "matched_fragments": 306,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda pacifica",
                "strain": "strain=DSM 25027",
                "accession": "GCA_003001695.1",
                "taxid": 1080225,
                "species_taxid": 1080225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6263,
                "matched_fragments": 254,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda aurantiaca",
                "strain": "strain=HME9304",
                "accession": "GCA_003269425.1",
                "taxid": 1383885,
                "species_taxid": 1383885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5875,
                "matched_fragments": 292,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Muricauda hymeniacidonis",
                "strain": "strain=176CP4-71",
                "accession": "GCA_004296335.1",
                "taxid": 2517819,
                "species_taxid": 2517819,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1552,
                "matched_fragments": 292,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Maribacter stanieri",
                "strain": "strain=DSM 19891",
                "accession": "GCA_900112245.1",
                "taxid": 440514,
                "species_taxid": 440514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3709,
                "matched_fragments": 102,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavivirga algicola",
                "strain": "strain=Y03",
                "accession": "GCA_012910715.1",
                "taxid": 2729136,
                "species_taxid": 2729136,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9758,
                "matched_fragments": 53,
                "total_fragments": 1270,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013090115.1",
                "gtdb_species": "s__Muricauda amphidinii",
                "ani": 100.0,
                "matched_fragments": 1267,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003382275.1",
                "gtdb_species": "s__Muricauda nanhaiensis",
                "ani": 79.3971,
                "matched_fragments": 566,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001683915.1",
                "gtdb_species": "s__Muricauda sp001683915",
                "ani": 78.1922,
                "matched_fragments": 392,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.66",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000745185.1",
                "gtdb_species": "s__Muricauda sp000745185",
                "ani": 78.1652,
                "matched_fragments": 412,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009184425.1",
                "gtdb_species": "s__Muricauda olearia",
                "ani": 78.1546,
                "matched_fragments": 384,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "96.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003385855.1",
                "gtdb_species": "s__Muricauda sp003385855",
                "ani": 78.1409,
                "matched_fragments": 388,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900215465.1",
                "gtdb_species": "s__Muricauda pacifica_A",
                "ani": 78.077,
                "matched_fragments": 400,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017313225.1",
                "gtdb_species": "s__Muricauda sp017313225",
                "ani": 78.0673,
                "matched_fragments": 410,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010993855.1",
                "gtdb_species": "s__Muricauda sp010993855",
                "ani": 78.0473,
                "matched_fragments": 379,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004916895.1",
                "gtdb_species": "s__Muricauda alvinocaridis",
                "ani": 77.9783,
                "matched_fragments": 373,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005937185.1",
                "gtdb_species": "s__Muricauda algicola",
                "ani": 77.9674,
                "matched_fragments": 343,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004804315.1",
                "gtdb_species": "s__Muricauda sp004804315",
                "ani": 77.9598,
                "matched_fragments": 343,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001413955.1",
                "gtdb_species": "s__Muricauda eckloniae",
                "ani": 77.9244,
                "matched_fragments": 364,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129665.1",
                "gtdb_species": "s__Muricauda flava",
                "ani": 77.8439,
                "matched_fragments": 345,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013911645.1",
                "gtdb_species": "s__Muricauda sp013911645",
                "ani": 77.8378,
                "matched_fragments": 303,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900102925.1",
                "gtdb_species": "s__Muricauda zhangzhouensis",
                "ani": 77.783,
                "matched_fragments": 340,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_010993815.1",
                "gtdb_species": "s__Muricauda sp010993815",
                "ani": 77.5768,
                "matched_fragments": 320,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018449435.1",
                "gtdb_species": "s__Muricauda sp018449435",
                "ani": 77.5,
                "matched_fragments": 313,
                "total_fragments": 1270,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.553,
        "cell_length": 0.23,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 27.5,
        "optimum_ph": 8.0,
        "genome_size": 4132279.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Flagellimonas",
        "amphidinii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}