{ "type": "genome", "identifier": "GCF_013112225.1", "organism": "Vreelandella azerica", "title": "Vreelandella azerica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CHUNG-ANG UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013112225.1", "bioproject": "PRJNA224116", "biosample": "SAMN14832834", "wgs_master": "JABFHI000000000.1", "refseq_category": "reference genome", "taxid": "2732867", "species_taxid": "2732867", "organism_name": "Vreelandella azerica", "infraspecific_name": "strain=TBZ9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/16", "asm_name": "ASM1311222v1", "asm_submitter": "CHUNG-ANG UNIVERSITY", "gbrs_paired_asm": "GCA_013112225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/112/225/GCF_013112225.1_ASM1311222v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3422918", "genome_size_ungapped": "3422918", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013112225.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "3455", "protein_coding_gene_count": "2814", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-16", "dateModified": "2020-05-16", "datePublished": "2020-05-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Vreelandella azerica" ], "sample_taxid": [ "2732867" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran" ], "sample_host_location_id": [], "data_size": "0.967 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3422918", "Number of Sequences": "20", "Longest Sequences (bp)": "841063", "N50 (bp)": "469004", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.4", "Number of CDSs": "3774", "Average Protein Length": "261.5", "Coding Ratio (%)": "86.5", "Number of rRNAs": "18", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas azerica", "strain": "strain=TBZ9", "accession": "GCA_013112225.1", "taxid": 2732867, "species_taxid": 2732867, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1128, "total_fragments": 1130, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas stevensii", "strain": "strain=S18214", "accession": "GCA_000275725.1", "taxid": 502821, "species_taxid": 502821, "relation_to_type": "type", "validated": true, "ani": 79.056, "matched_fragments": 371, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas massiliensis", "strain": "strain=Marseille-P2426", "accession": "GCA_900155385.1", "taxid": 1816686, "species_taxid": 1816686, "relation_to_type": "type", "validated": true, "ani": 78.9927, "matched_fragments": 370, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas piezotolerans", "strain": "strain=NBT06E8", "accession": "GCA_012427705.1", "taxid": 2609667, "species_taxid": 2609667, "relation_to_type": "type", "validated": true, "ani": 78.9732, "matched_fragments": 308, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas subglaciescola", "strain": "strain=ACAM 12", "accession": "GCA_900142895.1", "taxid": 29571, "species_taxid": 29571, "relation_to_type": "type", "validated": true, "ani": 78.7616, "matched_fragments": 296, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas hamiltonii", "strain": "strain=KCTC 22154", "accession": "GCA_014651775.1", "taxid": 502829, "species_taxid": 502829, "relation_to_type": "type", "validated": true, "ani": 78.7113, "matched_fragments": 366, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas songnenensis", "strain": "strain=CGMCC 1.12152", "accession": "GCA_003002925.1", "taxid": 1176243, "species_taxid": 1176243, "relation_to_type": "type", "validated": true, "ani": 78.7052, "matched_fragments": 363, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas johnsoniae", "strain": "strain=KCTC 22157", "accession": "GCA_014651795.1", "taxid": 502832, "species_taxid": 502832, "relation_to_type": "type", "validated": true, "ani": 78.6211, "matched_fragments": 368, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas populi", "strain": "strain=MC", "accession": "GCA_003989825.1", "taxid": 2498858, "species_taxid": 2498858, "relation_to_type": "type", "validated": true, "ani": 78.6141, "matched_fragments": 282, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas piezotolerans", "strain": "strain=NBT06E8", "accession": "GCA_009660035.1", "taxid": 2609667, "species_taxid": 2609667, "relation_to_type": "type", "validated": true, "ani": 78.5739, "matched_fragments": 297, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas salicampi", "strain": "strain=BH103", "accession": "GCA_013415105.1", "taxid": 1449798, "species_taxid": 1449798, "relation_to_type": "type", "validated": true, "ani": 78.5167, "matched_fragments": 346, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aquamarina", "strain": "strain=558", "accession": "GCA_900110265.1", "taxid": 77097, "species_taxid": 77097, "relation_to_type": "type", "validated": true, "ani": 78.3968, "matched_fragments": 325, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas meridiana", "strain": "strain=NBRC 15608", "accession": "GCA_006540125.1", "taxid": 29570, "species_taxid": 29570, "relation_to_type": "type", "validated": true, "ani": 78.3849, "matched_fragments": 305, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhanjiangensis", "strain": "strain=DSM 21076", "accession": "GCA_000377665.1", "taxid": 1121960, "species_taxid": 1121960, "relation_to_type": "type", "validated": true, "ani": 78.3163, "matched_fragments": 285, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas glaciei", "strain": "strain=DD39", "accession": "GCA_013415125.1", "taxid": 186761, "species_taxid": 186761, "relation_to_type": "type", "validated": true, "ani": 78.2783, "matched_fragments": 301, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas jeotgali", "strain": "strain=Hwa", "accession": "GCA_000334215.1", "taxid": 553386, "species_taxid": 553386, "relation_to_type": "type", "validated": true, "ani": 78.1521, "matched_fragments": 251, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 77.952, "matched_fragments": 242, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 77.9225, "matched_fragments": 238, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 77.7649, "matched_fragments": 274, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pacifica", "strain": "strain=NBRC 102220", "accession": "GCA_007989625.1", "taxid": 77098, "species_taxid": 77098, "relation_to_type": "type", "validated": true, "ani": 77.718, "matched_fragments": 226, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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null, "spiral_cell_shape": null }, "_genome_taxon": [ "Vreelandella", "azerica" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }