{ "type": "genome", "identifier": "GCF_013114825.1", "organism": "Bradyrhizobium australiense", "title": "Bradyrhizobium australiense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Empresa Brasileira de Pesquisa Agropecuaria", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013114825.1", "bioproject": "PRJNA224116", "biosample": "SAMN14448309", "wgs_master": "JAAVLX000000000.1", "refseq_category": "reference genome", "taxid": "2721161", "species_taxid": "2721161", "organism_name": "Bradyrhizobium australiense", "infraspecific_name": "strain=WSM 1791", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/18", "asm_name": "ASM1311482v1", "asm_submitter": "Empresa Brasileira de Pesquisa Agropecuaria", "gbrs_paired_asm": "GCA_013114825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/114/825/GCF_013114825.1_ASM1311482v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7436256", "genome_size_ungapped": "7436256", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013114825.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "7177", "protein_coding_gene_count": "6806", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-18", "dateModified": "2020-05-18", "datePublished": "2020-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium australiense" ], "sample_taxid": [ "2721161" ], "sample_host_organism": [ "Indigofera sp." ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Carnarvon" ], "sample_host_location_id": [], "data_size": "2.080 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7436256", "Number of Sequences": "46", "Longest Sequences (bp)": "1014921", "N50 (bp)": "720641", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.9", "Number of CDSs": "7125", "Average Protein Length": "284.6", "Coding Ratio (%)": "81.8", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium australiense", "strain": "strain=WSM 1791", "accession": "GCA_013114825.1", "taxid": 2721161, 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"matched_fragments": 1855, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium lablabi", "strain": "strain=CCBAU 23086", "accession": "GCA_001440475.1", "taxid": 722472, "species_taxid": 722472, "relation_to_type": "suspected-type", "validated": true, "ani": 88.1207, "matched_fragments": 1848, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium jicamae", "strain": "strain=PAC68", "accession": "GCA_001440395.1", "taxid": 280332, "species_taxid": 280332, "relation_to_type": "type", "validated": true, "ani": 87.4455, "matched_fragments": 1760, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 82.9924, "matched_fragments": 1214, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 82.5965, "matched_fragments": 1421, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 82.3998, "matched_fragments": 1319, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.3638, "matched_fragments": 1387, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 82.2426, "matched_fragments": 1312, "total_fragments": 2457, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013114825.1", "gtdb_species": "s__Bradyrhizobium australiense", "ani": 100.0, "matched_fragments": 2456, "total_fragments": 2457, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001693485.1", 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