{ "type": "genome", "identifier": "GCF_013114835.1", "organism": "Bradyrhizobium archetypum", "title": "Bradyrhizobium archetypum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Empresa Brasileira de Pesquisa Agropecuaria", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013114835.1", "bioproject": "PRJNA224116", "biosample": "SAMN14448121", "wgs_master": "JAAVLW000000000.1", "refseq_category": "reference genome", "taxid": "2721160", "species_taxid": "2721160", "organism_name": "Bradyrhizobium archetypum", "infraspecific_name": "strain=WSM 1744", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/18", "asm_name": "ASM1311483v1", "asm_submitter": "Empresa Brasileira de Pesquisa Agropecuaria", "gbrs_paired_asm": "GCA_013114835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/114/835/GCF_013114835.1_ASM1311483v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7017218", "genome_size_ungapped": "7017218", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013114835.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "6667", "protein_coding_gene_count": "6402", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-18", "dateModified": "2020-05-18", "datePublished": "2020-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium archetypum" ], "sample_taxid": [ "2721160" ], "sample_host_organism": [ "Muelleranthus trifoliolatus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Wooramel" ], "sample_host_location_id": [], "data_size": "1.958 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7017218", "Number of Sequences": "35", "Longest Sequences (bp)": "1031634", "N50 (bp)": "804703", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.3", "Number of CDSs": "6591", "Average Protein Length": "295.5", "Coding Ratio (%)": "83.3", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium archetypum", "strain": "strain=WSM 1744", "accession": "GCA_013114835.1", "taxid": 2721160, 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"total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium ivorense", "strain": "strain=CI-1B", "accession": "GCA_900696085.2", "taxid": 2511166, "species_taxid": 2511166, "relation_to_type": "type", "validated": true, "ani": 82.9116, "matched_fragments": 1443, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 82.8229, "matched_fragments": 1428, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_000379145.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 82.7949, "matched_fragments": 1421, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium septentrionale", "strain": "strain=1S1", "accession": "GCA_011516645.4", "taxid": 1404411, "species_taxid": 1404411, "relation_to_type": "type", "validated": true, "ani": 82.7909, "matched_fragments": 1397, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium pachyrhizi", "strain": "strain=PAC 48", "accession": "GCA_001189245.1", "taxid": 280333, "species_taxid": 280333, "relation_to_type": "type", "validated": true, "ani": 82.7588, "matched_fragments": 1379, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 82.5946, "matched_fragments": 1293, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.5833, "matched_fragments": 1389, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 82.5763, "matched_fragments": 1308, "total_fragments": 2322, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013114835.1", "gtdb_species": "s__Bradyrhizobium archetypum", "ani": 100.0, "matched_fragments": 2319, "total_fragments": 2322, "gtdb_taxonomy": 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