{ "type": "genome", "identifier": "GCF_013127955.1", "organism": "Spirosoma taeanense", "title": "Spirosoma taeanense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Atomic Energy Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013127955.1", "bioproject": "PRJNA224116", "biosample": "SAMN14910880", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2735870", "species_taxid": "2735870", "organism_name": "Spirosoma taeanense", "infraspecific_name": "strain=TS118", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/20", "asm_name": "ASM1312795v1", "asm_submitter": "Korea Atomic Energy Research Institute", "gbrs_paired_asm": "GCA_013127955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/127/955/GCF_013127955.1_ASM1312795v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5719932", "genome_size_ungapped": "5719932", "gc_percent": "52.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013127955.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4798", "protein_coding_gene_count": "4725", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-20", "dateModified": "2020-05-20", "datePublished": "2020-05-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirosoma taeanense" ], "sample_taxid": [ "2735870" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Coasted Sand Dune, Taean" ], "sample_host_location_id": [], "data_size": "1.626 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5719932", "Number of Sequences": "2", "Longest Sequences (bp)": "5691492", "N50 (bp)": "5691492", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.7", "Number of CDSs": "4741", "Average Protein Length": "355.5", "Coding Ratio (%)": "88.4", "Number of rRNAs": "8", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spirosoma taeanense", "strain": "strain=TS118", "accession": "GCA_013127955.1", "taxid": 2735870, "species_taxid": 2735870, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1906, 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"organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 77.618, "matched_fragments": 495, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 77.5923, "matched_fragments": 554, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma fluviale", "strain": "strain=DSM 29961", "accession": "GCA_900230225.1", "taxid": 1597977, "species_taxid": 1597977, "relation_to_type": "type", "validated": true, "ani": 77.5022, "matched_fragments": 510, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma radiotolerans", "strain": "strain=DG5A", "accession": "GCA_000974425.1", "taxid": 1379870, "species_taxid": 1379870, "relation_to_type": "type", "validated": true, "ani": 77.4647, "matched_fragments": 451, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 77.4575, "matched_fragments": 387, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma utsteinense", "strain": "strain=LMG 31447", "accession": "GCA_014282275.1", "taxid": 2585773, "species_taxid": 2585773, "relation_to_type": "type", "validated": true, "ani": 77.4216, "matched_fragments": 525, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 77.376, "matched_fragments": 496, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma profusum", "strain": "strain=BT702", "accession": "GCA_014699005.1", "taxid": 2771354, "species_taxid": 2771354, "relation_to_type": "type", "validated": true, "ani": 77.3562, "matched_fragments": 397, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 77.3453, "matched_fragments": 514, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma arboris", "strain": "strain=HMF4905", "accession": "GCA_009754945.1", "taxid": 2682092, "species_taxid": 2682092, "relation_to_type": "type", "validated": true, "ani": 77.3375, "matched_fragments": 347, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma panaciterrae", "strain": "strain=DSM 21099", "accession": "GCA_000374025.1", "taxid": 496058, "species_taxid": 496058, "relation_to_type": "type", "validated": true, "ani": 77.2504, "matched_fragments": 406, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endophyticum", "strain": "strain=DSM 26130", "accession": "GCA_900112365.1", "taxid": 662367, "species_taxid": 662367, "relation_to_type": "type", "validated": true, "ani": 77.2454, "matched_fragments": 434, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella rosea", "strain": "strain=KCTC52004", "accession": "GCA_003858635.1", "taxid": 2025312, "species_taxid": 2025312, "relation_to_type": "type", "validated": true, "ani": 76.3097, "matched_fragments": 224, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella humicola", "strain": "strain=MA1", "accession": "GCA_008727875.1", "taxid": 2607654, "species_taxid": 2607654, "relation_to_type": "type", "validated": true, "ani": 76.2688, "matched_fragments": 281, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella rubiginis", "strain": "strain=HMF5335", "accession": "GCA_017353185.1", "taxid": 2817060, "species_taxid": 2817060, "relation_to_type": "type", "validated": true, "ani": 76.0942, "matched_fragments": 225, "total_fragments": 1906, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013127955.1", "gtdb_species": "s__Spirosoma taeanense", "ani": 100.0, "matched_fragments": 1906, "total_fragments": 1906, "gtdb_taxonomy": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Spirosoma", "taeanense" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }