{
    "type": "genome",
    "identifier": "GCF_013133775.1",
    "organism": "Pelistega europaea",
    "title": "Pelistega europaea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hainan Medical University-University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013133775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14792869",
        "wgs_master": "JABGBO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "106147",
        "species_taxid": "106147",
        "organism_name": "Pelistega europaea",
        "infraspecific_name": "strain=LMG10982",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/20",
        "asm_name": "ASM1313377v1",
        "asm_submitter": "Hainan Medical University-University",
        "gbrs_paired_asm": "GCA_013133775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/133/775/GCF_013133775.1_ASM1313377v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2442394",
        "genome_size_ungapped": "2442394",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "28",
        "contig_count": "28",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013133775.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "2122",
        "protein_coding_gene_count": "2057",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-20",
    "dateModified": "2020-05-20",
    "datePublished": "2020-05-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pelistega europaea"
        ],
        "sample_taxid": [
            "106147"
        ],
        "sample_host_organism": [
            "pigeons"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Haikou, Hainan province"
        ],
        "sample_host_location_id": [],
        "data_size": "0.695 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2442394",
        "Number of Sequences": "28",
        "Longest Sequences (bp)": "346523",
        "N50 (bp)": "278300",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.6",
        "Number of CDSs": "2050",
        "Average Protein Length": "340.5",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pelistega europaea",
                "strain": "strain=LMG10982",
                "accession": "GCA_013133775.1",
                "taxid": 106147,
                "species_taxid": 106147,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 799,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pelistega suis",
                "strain": "strain=3340-03",
                "accession": "GCA_013133795.1",
                "taxid": 1631957,
                "species_taxid": 1631957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4286,
                "matched_fragments": 234,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelistega indica",
                "strain": "strain=HM-7",
                "accession": "GCA_000506865.1",
                "taxid": 1414851,
                "species_taxid": 1414851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8954,
                "matched_fragments": 172,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelistega ratti",
                "strain": "strain=NLN63",
                "accession": "GCA_009833965.1",
                "taxid": 2652177,
                "species_taxid": 2652177,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8473,
                "matched_fragments": 170,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Taylorella equigenitalis",
                "strain": "strain=ATCC 35865",
                "accession": "GCA_000276685.1",
                "taxid": 29575,
                "species_taxid": 29575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4262,
                "matched_fragments": 52,
                "total_fragments": 800,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013133775.1",
                "gtdb_species": "s__Pelistega europaea",
                "ani": 100.0,
                "matched_fragments": 799,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelistega",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013133795.1",
                "gtdb_species": "s__Pelistega suis",
                "ani": 78.4287,
                "matched_fragments": 234,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelistega",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000506865.1",
                "gtdb_species": "s__Pelistega indica",
                "ani": 77.8948,
                "matched_fragments": 172,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelistega",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_009833965.1",
                "gtdb_species": "s__Pelistega ratti",
                "ani": 77.8473,
                "matched_fragments": 170,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelistega",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000276685.1",
                "gtdb_species": "s__Taylorella equigenitalis",
                "ani": 76.4262,
                "matched_fragments": 52,
                "total_fragments": 800,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Taylorella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 32.5,
        "optimum_ph": null,
        "genome_size": 2504912.0,
        "gc_content": 38.9,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pelistega",
        "europaea"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}