{
    "type": "genome",
    "identifier": "GCF_013133795.1",
    "organism": "Pelistega suis",
    "title": "Pelistega suis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Hainan Medical University-University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013133795.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14792867",
        "wgs_master": "JABGBN000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1631957",
        "species_taxid": "1631957",
        "organism_name": "Pelistega suis",
        "infraspecific_name": "strain=3340-03",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/20",
        "asm_name": "ASM1313379v1",
        "asm_submitter": "Hainan Medical University-University",
        "gbrs_paired_asm": "GCA_013133795.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/133/795/GCF_013133795.1_ASM1313379v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2227006",
        "genome_size_ungapped": "2227006",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013133795.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "2131",
        "protein_coding_gene_count": "2065",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-20",
    "dateModified": "2020-05-20",
    "datePublished": "2020-05-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pelistega suis"
        ],
        "sample_taxid": [
            "1631957"
        ],
        "sample_host_organism": [
            "pigs"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Haikou, Hainan province"
        ],
        "sample_host_location_id": [],
        "data_size": "0.633 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2227006",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "692785",
        "N50 (bp)": "422573",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.7",
        "Number of CDSs": "2051",
        "Average Protein Length": "325.6",
        "Coding Ratio (%)": "89.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pelistega suis",
                "strain": "strain=3340-03",
                "accession": "GCA_013133795.1",
                "taxid": 1631957,
                "species_taxid": 1631957,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 729,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pelistega indica",
                "strain": "strain=HM-7",
                "accession": "GCA_000506865.1",
                "taxid": 1414851,
                "species_taxid": 1414851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5835,
                "matched_fragments": 224,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelistega europaea",
                "strain": "strain=LMG10982",
                "accession": "GCA_013133775.1",
                "taxid": 106147,
                "species_taxid": 106147,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4874,
                "matched_fragments": 226,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelistega ratti",
                "strain": "strain=NLN63",
                "accession": "GCA_009833965.1",
                "taxid": 2652177,
                "species_taxid": 2652177,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3596,
                "matched_fragments": 195,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oligella ureolytica",
                "strain": "strain=NCTC11997",
                "accession": "GCA_900454285.1",
                "taxid": 90244,
                "species_taxid": 90244,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5751,
                "matched_fragments": 58,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oligella urethralis",
                "strain": "strain=DSM 7531",
                "accession": "GCA_000372065.1",
                "taxid": 90245,
                "species_taxid": 90245,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2015,
                "matched_fragments": 50,
                "total_fragments": 729,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013133795.1",
                "gtdb_species": "s__Pelistega suis",
                "ani": 100.0,
                "matched_fragments": 729,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelistega",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000506865.1",
                "gtdb_species": "s__Pelistega indica",
                "ani": 78.6023,
                "matched_fragments": 223,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelistega",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013133775.1",
                "gtdb_species": "s__Pelistega europaea",
                "ani": 78.4874,
                "matched_fragments": 226,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelistega",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009833965.1",
                "gtdb_species": "s__Pelistega ratti",
                "ani": 78.3596,
                "matched_fragments": 195,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelistega",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000373745.1",
                "gtdb_species": "s__Oligella ureolytica",
                "ani": 76.054,
                "matched_fragments": 57,
                "total_fragments": 729,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Oligella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 33.5,
        "optimum_tmp": 32.5,
        "optimum_ph": null,
        "genome_size": 2504912.0,
        "gc_content": 38.9,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pelistega",
        "suis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}