{ "type": "genome", "identifier": "GCF_013137895.1", "organism": "Hymenobacter taeanensis", "title": "Hymenobacter taeanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Atomic Energy Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013137895.1", "bioproject": "PRJNA224116", "biosample": "SAMN14883640", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2735321", "species_taxid": "2735321", "organism_name": "Hymenobacter taeanensis", "infraspecific_name": "strain=TS19", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/21", "asm_name": "ASM1313789v1", "asm_submitter": "Korea Atomic Energy Research Institute", "gbrs_paired_asm": "GCA_013137895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/137/895/GCF_013137895.1_ASM1313789v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4879662", "genome_size_ungapped": "4879662", "gc_percent": "56.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013137895.1-RS_2024_07_16", "annotation_date": "2024-07-16", "total_gene_count": "4086", "protein_coding_gene_count": "4006", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-21", "dateModified": "2020-05-21", "datePublished": "2020-05-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter taeanensis" ], "sample_taxid": [ "2735321" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Coasted Sand Dune, Taean" ], "sample_host_location_id": [], "data_size": "1.385 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4879662", "Number of Sequences": "1", "Longest Sequences (bp)": "4879662", "N50 (bp)": "4879662", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.1", "Number of CDSs": "4076", "Average Protein Length": "338.1", "Coding Ratio (%)": "84.7", "Number of rRNAs": "8", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter wooponensis", "strain": "strain=JCM 19491", "accession": "GCA_004745865.1", "taxid": 1525360, "species_taxid": 1525360, "relation_to_type": "type", "validated": true, "ani": 84.3927, "matched_fragments": 1308, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter fodinae", "strain": "strain=92R-1", "accession": "GCA_004745825.1", "taxid": 2510796, "species_taxid": 2510796, "relation_to_type": "type", "validated": true, "ani": 83.695, "matched_fragments": 1276, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter gelipurpurascens", "strain": "strain=DSM 11116", "accession": "GCA_900187375.1", "taxid": 89968, "species_taxid": 89968, "relation_to_type": "type", "validated": true, "ani": 82.3086, "matched_fragments": 1132, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 80.506, "matched_fragments": 905, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sediminis", "strain": "strain=ELS1360", "accession": "GCA_003231285.1", "taxid": 2218621, "species_taxid": 2218621, "relation_to_type": "type", "validated": true, "ani": 80.1703, "matched_fragments": 870, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 80.0739, "matched_fragments": 820, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 79.9901, "matched_fragments": 860, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 79.7387, "matched_fragments": 841, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter duratus", "strain": "strain=BT646", "accession": "GCA_014698995.1", "taxid": 2771356, "species_taxid": 2771356, "relation_to_type": "type", "validated": true, "ani": 79.4745, "matched_fragments": 707, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 79.3835, "matched_fragments": 722, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 79.326, "matched_fragments": 693, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter mucosus", "strain": "strain=DSM 28041", "accession": "GCA_900188255.1", "taxid": 1411120, "species_taxid": 1411120, "relation_to_type": "type", "validated": true, "ani": 79.2562, "matched_fragments": 787, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 78.9327, "matched_fragments": 727, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 78.0863, "matched_fragments": 530, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 77.6532, "matched_fragments": 512, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter montanus", "strain": "strain=BT664", "accession": "GCA_014699115.1", "taxid": 2771359, "species_taxid": 2771359, "relation_to_type": "type", "validated": true, "ani": 77.3172, "matched_fragments": 365, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013137895.1", "gtdb_species": "s__Hymenobacter sp013137895", "ani": 100.0, "matched_fragments": 1626, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004745865.1", "gtdb_species": "s__Hymenobacter wooponensis", "ani": 84.415, "matched_fragments": 1304, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745825.1", "gtdb_species": "s__Hymenobacter sp004745825", "ani": 83.7045, "matched_fragments": 1275, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900187375.1", "gtdb_species": "s__Hymenobacter gelipurpurascens", "ani": 82.3107, "matched_fragments": 1132, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006352025.1", "gtdb_species": "s__Hymenobacter sp006352025", "ani": 80.6266, "matched_fragments": 932, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014199535.1", "gtdb_species": "s__Hymenobacter latericoloratus", "ani": 80.6256, "matched_fragments": 924, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014640315.1", "gtdb_species": "s__Hymenobacter glacieicola", "ani": 80.4954, "matched_fragments": 907, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003944715.1", "gtdb_species": "s__Hymenobacter rigui", "ani": 80.0536, "matched_fragments": 823, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003944765.1", "gtdb_species": "s__Hymenobacter perfusus", "ani": 79.9837, "matched_fragments": 861, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000737515.1", "gtdb_species": "s__Hymenobacter sp000737515", "ani": 79.9414, "matched_fragments": 804, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001280305.1", "gtdb_species": "s__Hymenobacter sp001280305", "ani": 79.7494, "matched_fragments": 598, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014333525.1", "gtdb_species": "s__Hymenobacter sp014333525", "ani": 79.5614, "matched_fragments": 722, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018145755.1", "gtdb_species": "s__Hymenobacter sp018145755", "ani": 79.4706, "matched_fragments": 708, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003583925.1", "gtdb_species": "s__Hymenobacter rubripertinctus", "ani": 79.2191, "matched_fragments": 733, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745955.1", "gtdb_species": "s__Hymenobacter elongatus", "ani": 78.5923, "matched_fragments": 585, "total_fragments": 1626, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.338, "doubling_h": null, "growth_tmp": 25.583, "optimum_tmp": 23.888, "optimum_ph": 7.3, "genome_size": 5095981.0, "gc_content": 60.5, "coding_genes": 4057.5, "rRNA16S_genes": 3.0, "tRNA_genes": 43.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Hymenobacter", "taeanensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }