{ "type": "genome", "identifier": "GCF_013141695.1", "organism": "Paenibacillus plantarum", "title": "Paenibacillus plantarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ghent University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013141695.1", "bioproject": "PRJNA224116", "biosample": "SAMN13054892", "wgs_master": "WHNY00000000.1", "refseq_category": "reference genome", "taxid": "2654975", "species_taxid": "2654975", "organism_name": "Paenibacillus plantarum", "infraspecific_name": "strain=LMG 31461", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/22", "asm_name": "ASM1314169v1", "asm_submitter": "Ghent University", "gbrs_paired_asm": "GCA_013141695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/141/695/GCF_013141695.1_ASM1314169v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9203724", "genome_size_ungapped": "9203724", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "95", "contig_count": "95", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013141695.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "7708", "protein_coding_gene_count": "7535", "non_coding_gene_count": "99", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-22", "dateModified": "2020-05-22", "datePublished": "2020-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus plantarum" ], "sample_taxid": [ "2654975" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium:Ghent" ], "sample_host_location_id": [], "data_size": "2.638 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9203724", "Number of Sequences": "95", "Longest Sequences (bp)": "893004", "N50 (bp)": "210627", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.1", "Number of CDSs": "7695", "Average Protein Length": "351.5", "Coding Ratio (%)": "88.2", "Number of rRNAs": "1", "Number of tRNAs": "92", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus plantarum", "strain": "strain=LMG 31461", "accession": "GCA_013141695.1", "taxid": 2654975, "species_taxid": 2654975, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3018, "total_fragments": 3021, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus oryzisoli", "strain": "strain=1ZS3-15", "accession": "GCA_001653565.1", "taxid": 1850517, "species_taxid": 1850517, "relation_to_type": "type", "validated": true, "ani": 87.3748, "matched_fragments": 1962, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus pectinilyticus", "strain": "strain=KCTC13222", "accession": "GCA_001700435.1", "taxid": 512399, "species_taxid": 512399, "relation_to_type": "type", "validated": true, "ani": 83.4475, "matched_fragments": 1420, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus phytorum", "strain": "strain=LMG 31458", "accession": "GCA_013141715.1", "taxid": 2654977, "species_taxid": 2654977, "relation_to_type": "type", "validated": true, "ani": 81.2254, "matched_fragments": 981, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus germinis", "strain": "strain=LMG 31460", "accession": "GCA_013141785.1", "taxid": 2654979, "species_taxid": 2654979, "relation_to_type": "type", "validated": true, "ani": 81.1128, "matched_fragments": 975, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus alginolyticus", "strain": "strain=DSM 5050", "accession": "GCA_000422905.1", "taxid": 59839, "species_taxid": 59839, "relation_to_type": "type", "validated": true, "ani": 80.9482, "matched_fragments": 849, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus alginolyticus", "strain": "strain=NBRC 15375", "accession": "GCA_004000725.1", "taxid": 59839, "species_taxid": 59839, "relation_to_type": "type", "validated": true, "ani": 80.8922, "matched_fragments": 842, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus frigoriresistens", "strain": "strain=LMG 31322", "accession": "GCA_013266765.1", "taxid": 1143711, "species_taxid": 1143711, "relation_to_type": "type", "validated": true, "ani": 80.7252, "matched_fragments": 808, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ferrarius", "strain": "strain=CY1", "accession": "GCA_002027705.1", "taxid": 1469647, "species_taxid": 1469647, "relation_to_type": "type", "validated": true, "ani": 80.6567, "matched_fragments": 911, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus aceris", "strain": "strain=DSM 24950", "accession": "GCA_017874035.1", "taxid": 869555, "species_taxid": 869555, "relation_to_type": "type", "validated": true, "ani": 80.2168, "matched_fragments": 816, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus chondroitinus", "strain": "strain=NBRC 15376", "accession": "GCA_004000765.1", "taxid": 59842, "species_taxid": 59842, "relation_to_type": "type", "validated": true, "ani": 80.196, "matched_fragments": 817, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus anseongense", "strain": "strain=MAH-34", "accession": "GCA_009757995.1", "taxid": 2682845, "species_taxid": 2682845, "relation_to_type": "type", "validated": true, "ani": 80.1893, "matched_fragments": 831, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus planticolens", "strain": "strain=LMG 31457", "accession": "GCA_013141725.1", "taxid": 2654976, "species_taxid": 2654976, "relation_to_type": "type", "validated": true, "ani": 80.1516, "matched_fragments": 798, "total_fragments": 3021, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rigui", "strain": "strain=JCM 16352", "accession": "GCA_002234615.1", "taxid": 554312, "species_taxid": 554312, 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100.0, "matched_fragments": 3018, "total_fragments": 3021, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001428045.1", "gtdb_species": "s__Paenibacillus_E sp001428045", "ani": 91.9407, "matched_fragments": 2074, "total_fragments": 3021, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__NBRC-103111;g__Paenibacillus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013204845.1", "gtdb_species": "s__Paenibacillus_E qinlingensis", "ani": 90.1544, "matched_fragments": 2123, 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