{ "type": "genome", "identifier": "GCF_013167215.1", "organism": "Sphingobacterium prati", "title": "Sphingobacterium prati", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University Reims Champagne Ardennes UMR FARE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013167215.1", "bioproject": "PRJNA224116", "biosample": "SAMN14941650", "wgs_master": "JABJWY000000000.1", "refseq_category": "reference genome", "taxid": "2737006", "species_taxid": "2737006", "organism_name": "Sphingobacterium prati", "infraspecific_name": "strain=arapr2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/26", "asm_name": "ASM1316721v1", "asm_submitter": "University Reims Champagne Ardennes UMR FARE", "gbrs_paired_asm": "GCA_013167215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/167/215/GCF_013167215.1_ASM1316721v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6020522", "genome_size_ungapped": "6019956", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013167215.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "5021", "protein_coding_gene_count": "4933", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-26", "dateModified": "2020-05-26", "datePublished": "2020-05-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingobacterium prati" ], "sample_taxid": [ "2737006" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.715 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6020522", "Number of Sequences": "39", "Longest Sequences (bp)": "1360081", "N50 (bp)": "445876", "Gap Ratio (%)": "0.009567", "GCcontent (%)": "40.4", "Number of CDSs": "4883", "Average Protein Length": "357.0", "Coding Ratio (%)": "86.9", "Number of rRNAs": "1", "Number of tRNAs": "71", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingobacterium prati", "strain": "strain=arapr2", "accession": "GCA_013167215.1", "taxid": 2737006, "species_taxid": 2737006, 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