{ "type": "genome", "identifier": "GCF_013167895.1", "organism": "Streptomyces fulvorobeus", "title": "Streptomyces fulvorobeus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013167895.1", "bioproject": "PRJNA224116", "biosample": "SAMD00219684", "wgs_master": "BLWC00000000.1", "refseq_category": "na", "taxid": "284028", "species_taxid": "284028", "organism_name": "Streptomyces fulvorobeus", "infraspecific_name": "strain=NBRC 15897", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/13", "asm_name": "ASM1316789v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_013167895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/167/895/GCF_013167895.1_ASM1316789v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6633309", "genome_size_ungapped": "6633309", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013167895.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "6022", "protein_coding_gene_count": "5340", "non_coding_gene_count": "100", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-13", "dateModified": "2020-05-13", "datePublished": "2020-05-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces fulvorobeus" ], "sample_taxid": [ "284028" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.786 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6633309", "Number of Sequences": "2", "Longest Sequences (bp)": "6599506", "N50 (bp)": "6599506", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "6254", "Average Protein Length": "306.9", "Coding Ratio (%)": "86.8", "Number of rRNAs": "18", "Number of tRNAs": "82", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces fulvorobeus", "strain": "strain=NBRC 15897", "accession": "GCA_013167895.1", "taxid": 284028, "species_taxid": 284028, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2208, "total_fragments": 2210, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces fulvorobeus", "strain": "strain=DSM 41455", "accession": "GCA_013409565.1", "taxid": 284028, "species_taxid": 284028, "relation_to_type": "type", "validated": true, "ani": 99.9852, "matched_fragments": 2207, "total_fragments": 2210, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces clavifer", "strain": "strain=DSM 40843", "accession": "GCA_017876255.1", "taxid": 68188, "species_taxid": 68188, "relation_to_type": "type", "validated": true, "ani": 85.6646, "matched_fragments": 1507, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces clavifer", "strain": "strain=JCM 5059", "accession": "GCA_014651175.1", "taxid": 68188, "species_taxid": 68188, "relation_to_type": "type", "validated": true, "ani": 85.6263, "matched_fragments": 1478, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces microflavus", "strain": "strain=JCM 4496", "accession": "GCA_014650075.1", "taxid": 1919, "species_taxid": 1919, "relation_to_type": "type", "validated": true, "ani": 85.2724, "matched_fragments": 1500, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces brevispora", "strain": "strain=DSM 42059", "accession": "GCA_007829885.1", "taxid": 887462, "species_taxid": 887462, "relation_to_type": "type", "validated": true, "ani": 85.2285, "matched_fragments": 1405, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Kitasatospora] papulosa", "strain": "strain=NRRL B-16504", "accession": "GCA_000717245.1", "taxid": 1464011, "species_taxid": 1464011, "relation_to_type": "type", "validated": true, "ani": 85.1241, "matched_fragments": 1457, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseus", "strain": "strain=DSM 40236", "accession": "GCA_900105705.1", "taxid": 1911, "species_taxid": 1911, "relation_to_type": "type", "validated": true, "ani": 85.1104, "matched_fragments": 1478, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseolus", "strain": "strain=NRRL B-2925", "accession": "GCA_000721185.1", "taxid": 1909, "species_taxid": 1909, "relation_to_type": "type", "validated": true, "ani": 85.0981, "matched_fragments": 1368, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rhizosphaericola", "strain": "strain=1AS2c", "accession": "GCA_004794175.1", "taxid": 2564098, "species_taxid": 2564098, "relation_to_type": "type", "validated": true, "ani": 85.0945, "matched_fragments": 1205, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces atratus", "strain": "strain=JCM 3386", "accession": "GCA_014648655.1", "taxid": 1893, "species_taxid": 1893, "relation_to_type": "suspected-type", "validated": true, "ani": 85.0741, "matched_fragments": 1369, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces poriferorum", "strain": "strain=P01-B04", "accession": "GCA_019399235.1", "taxid": 2798799, "species_taxid": 2798799, "relation_to_type": "type", "validated": true, "ani": 84.9242, "matched_fragments": 1316, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parvus", "strain": "strain=NRRL B-1455", "accession": "GCA_008632535.1", "taxid": 66428, "species_taxid": 66428, "relation_to_type": "type", "validated": true, "ani": 84.9001, "matched_fragments": 1348, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nitrosporeus", "strain": "strain=ATCC 12769", "accession": "GCA_008704555.1", "taxid": 28894, "species_taxid": 28894, "relation_to_type": "type", "validated": true, "ani": 84.812, "matched_fragments": 1372, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nitrosporeus", "strain": "strain=JCM 4598", "accession": "GCA_014650375.1", "taxid": 28894, "species_taxid": 28894, "relation_to_type": "type", "validated": true, "ani": 84.6694, "matched_fragments": 1378, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces formicae", "strain": "strain=1H-GS9", "accession": "GCA_022647665.1", "taxid": 1616117, "species_taxid": 1616117, "relation_to_type": "type", "validated": true, "ani": 82.7302, "matched_fragments": 1274, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces blattellae", "strain": "strain=TRM63209", "accession": "GCA_009709555.1", "taxid": 2569855, "species_taxid": 2569855, "relation_to_type": "type", "validated": true, "ani": 81.2237, "matched_fragments": 1094, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseirectus", "strain": "strain=CRXT-G-22", "accession": "GCA_014489635.1", "taxid": 2768066, "species_taxid": 2768066, "relation_to_type": "type", "validated": true, "ani": 80.6151, "matched_fragments": 1152, "total_fragments": 2210, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013167895.1", "gtdb_species": "s__Streptomyces fulvorobeus", "ani": 100.0, "matched_fragments": 2208, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014216315.1", "gtdb_species": "s__Streptomyces finlayi_A", "ani": 90.0723, "matched_fragments": 1600, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001905125.1", "gtdb_species": "s__Streptomyces sp001905125", "ani": 86.2387, "matched_fragments": 1466, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014651175.1", "gtdb_species": "s__Streptomyces clavifer", "ani": 85.6202, "matched_fragments": 1479, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.53", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002941025.1", "gtdb_species": "s__Streptomyces sp002941025", "ani": 85.5323, "matched_fragments": 1483, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000745675.1", "gtdb_species": "s__Streptomyces atratus_A", "ani": 85.5057, "matched_fragments": 1297, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002910915.1", "gtdb_species": "s__Streptomyces sp002910915", "ani": 85.4964, "matched_fragments": 1405, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002711365.1", "gtdb_species": "s__Streptomyces sp002711365", "ani": 85.4716, "matched_fragments": 1482, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "96.67", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000721175.1", "gtdb_species": "s__Streptomyces anulatus_C", "ani": 85.3942, "matched_fragments": 1420, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002154345.1", "gtdb_species": "s__Streptomyces fimicarius", "ani": 85.3034, "matched_fragments": 1262, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_007829885.1", "gtdb_species": "s__Streptomyces brevispora", "ani": 85.2354, "matched_fragments": 1405, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016901035.1", "gtdb_species": "s__Streptomyces sp016901035", "ani": 85.2036, "matched_fragments": 1328, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016909575.1", "gtdb_species": "s__Streptomyces sp016909575", "ani": 85.1237, "matched_fragments": 1454, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007829855.1", "gtdb_species": "s__Streptomyces argenteolus", "ani": 85.0967, "matched_fragments": 1477, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017353455.1", "gtdb_species": "s__Streptomyces laculatispora", "ani": 85.0845, "matched_fragments": 1101, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.53", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014648655.1", "gtdb_species": "s__Streptomyces atratus", "ani": 85.0774, "matched_fragments": 1368, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.41", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900091955.1", "gtdb_species": "s__Streptomyces sp900091955", "ani": 85.0232, "matched_fragments": 1366, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008042275.1", "gtdb_species": "s__Streptomyces sp008042275", "ani": 84.9754, "matched_fragments": 1434, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004795105.1", "gtdb_species": "s__Streptomyces sp004795105", "ani": 84.9703, "matched_fragments": 1432, "total_fragments": 2210, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 28.0, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "fulvorobeus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }