{ "type": "genome", "identifier": "GCF_013177655.1", "organism": "Campylobacter canadensis", "title": "Campylobacter canadensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA, ARS, WRRC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013177655.1", "bioproject": "PRJNA224116", "biosample": "SAMN03737966", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "449520", "species_taxid": "449520", "organism_name": "Campylobacter canadensis", "infraspecific_name": "strain=LMG 24001", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/27", "asm_name": "ASM1317765v1", "asm_submitter": "USDA, ARS, WRRC", "gbrs_paired_asm": "GCA_013177655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/177/655/GCF_013177655.1_ASM1317765v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1923009", "genome_size_ungapped": "1923009", "gc_percent": "27.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013177655.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "1893", "protein_coding_gene_count": "1808", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-27", "dateModified": "2020-05-27", "datePublished": "2020-05-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter canadensis" ], "sample_taxid": [ "449520" ], "sample_host_organism": [ "Whooping crane" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "0.504 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1923009", "Number of Sequences": "1", "Longest Sequences (bp)": "1923009", "N50 (bp)": "1923009", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.4", "Number of CDSs": "1846", "Average Protein Length": "315.1", "Coding Ratio (%)": "90.7", "Number of rRNAs": "8", "Number of tRNAs": "40", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter canadensis", "strain": "strain=LMG 24001", "accession": "GCA_013177655.1", "taxid": 449520, "species_taxid": 449520, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 638, "total_fragments": 641, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter jejuni subsp. jejuni", "strain": "strain=ATCC 33560", "accession": "GCA_000254515.2", "taxid": 32022, "species_taxid": 197, "relation_to_type": "type", "validated": true, "ani": 79.3969, "matched_fragments": 105, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter jejuni subsp. jejuni", "strain": "strain=CCUG 11284", "accession": "GCA_008802045.1", "taxid": 32022, "species_taxid": 197, "relation_to_type": "type", "validated": true, "ani": 79.1699, "matched_fragments": 116, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter lari subsp. concheus", "strain": "strain=LMG 21009", "accession": "GCA_008245025.1", "taxid": 488545, "species_taxid": 201, "relation_to_type": "type", "validated": true, "ani": 77.8556, "matched_fragments": 101, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter armoricus", "strain": "strain=CCUG 73571", "accession": "GCA_013372105.1", "taxid": 2505970, "species_taxid": 2505970, "relation_to_type": "type", "validated": true, "ani": 77.8541, "matched_fragments": 127, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter hepaticus", "strain": "strain=HV10", "accession": "GCA_001687475.2", "taxid": 1813019, "species_taxid": 1813019, "relation_to_type": "type", "validated": true, "ani": 77.7446, "matched_fragments": 117, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter subantarcticus", "strain": "strain=LMG 24377", "accession": "GCA_000816305.1", "taxid": 497724, "species_taxid": 497724, "relation_to_type": "type", "validated": true, "ani": 77.6785, "matched_fragments": 103, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter volucris", "strain": "strain=LMG 24380", "accession": "GCA_008245045.1", "taxid": 1031542, "species_taxid": 1031542, "relation_to_type": "type", "validated": true, "ani": 77.671, "matched_fragments": 131, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter peloridis", "strain": "strain=LMG 23910", "accession": "GCA_000816785.1", "taxid": 488546, "species_taxid": 488546, "relation_to_type": "type", "validated": true, "ani": 77.6036, "matched_fragments": 130, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter armoricus", "strain": "strain=CA656", "accession": "GCA_006176165.1", "taxid": 2505970, "species_taxid": 2505970, "relation_to_type": "type", "validated": true, "ani": 77.5286, "matched_fragments": 114, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter corcagiensis", "strain": "strain=LMG 27932", "accession": "GCA_013201645.1", "taxid": 1448857, "species_taxid": 1448857, "relation_to_type": "type", "validated": true, "ani": 77.4774, "matched_fragments": 52, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter lari subsp. concheus", "strain": "strain=CCUG 55786", "accession": "GCA_008802005.1", "taxid": 488545, "species_taxid": 201, "relation_to_type": "type", "validated": true, "ani": 77.3595, "matched_fragments": 97, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter volucris", "strain": "strain=CCUG 57498", "accession": "GCA_008801985.1", "taxid": 1031542, "species_taxid": 1031542, "relation_to_type": "type", "validated": true, "ani": 77.1184, "matched_fragments": 129, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter aviculae", "strain": "strain=MIT17-670", "accession": "GCA_005406215.1", 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"relation_to_type": "type", "validated": true, "ani": 76.0087, "matched_fragments": 59, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013177655.1", "gtdb_species": "s__Campylobacter_E canadensis", "ani": 100.0, "matched_fragments": 638, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018501205.1", "gtdb_species": "s__Campylobacter_E sp018501205", "ani": 79.3712, "matched_fragments": 288, "total_fragments": 641, "gtdb_taxonomy": 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