{ "type": "genome", "identifier": "GCF_013177675.1", "organism": "Arcobacter acticola", "title": "Arcobacter acticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA, ARS, WRRC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013177675.1", "bioproject": "PRJNA224116", "biosample": "SAMN12421736", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1849015", "species_taxid": "1849015", "organism_name": "Arcobacter acticola", "infraspecific_name": "strain=KCTC 52212", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/27", "asm_name": "ASM1317767v1", "asm_submitter": "USDA, ARS, WRRC", "gbrs_paired_asm": "GCA_013177675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/177/675/GCF_013177675.1_ASM1317767v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3019071", "genome_size_ungapped": "3019071", "gc_percent": "27.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013177675.1-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "3105", "protein_coding_gene_count": "3007", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-27", "dateModified": "2020-05-27", "datePublished": "2020-05-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcobacter acticola" ], "sample_taxid": [ "1849015" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Sea of Japan" ], "sample_host_location_id": [], "data_size": "0.808 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3019071", "Number of Sequences": "1", "Longest Sequences (bp)": "3019071", "N50 (bp)": "3019071", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.6", "Number of CDSs": "3037", "Average Protein Length": "303.0", "Coding Ratio (%)": "91.4", "Number of rRNAs": "18", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcobacter acticola", "strain": "strain=KCTC 52212", "accession": "GCA_013177675.1", "taxid": 1849015, "species_taxid": 1849015, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1005, "total_fragments": 1006, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=LMG 26156", "accession": "GCA_013201665.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 83.8988, "matched_fragments": 651, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter caeni", "strain": "strain=RW17-10", "accession": "GCA_003063245.1", "taxid": 1912877, "species_taxid": 1912877, "relation_to_type": "type", "validated": true, "ani": 83.8157, "matched_fragments": 574, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT 7833", "accession": "GCA_003544815.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 83.6805, "matched_fragments": 608, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003544815.1", "gtdb_species": "s__Aliarcobacter suis", "ani": 83.6014, "matched_fragments": 610, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003544915.1", "gtdb_species": "s__Aliarcobacter ellisii", "ani": 83.34, "matched_fragments": 650, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.73", "min_intra_species_ani": "97.46", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.531, "cell_length": 0.145, "doubling_h": 0.086, "growth_tmp": 30.545, "optimum_tmp": 28.45, "optimum_ph": 7.25, "genome_size": 2607833.553, "gc_content": 27.345, "coding_genes": 2595.468, "rRNA16S_genes": 4.5, "tRNA_genes": 56.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.916, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.062, "aerobic_respiration": 0.937, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.666, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.222, "spiral_cell_shape": 0.111 }, "_genome_taxon": [ "Arcobacter", "acticola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }