{
    "type": "genome",
    "identifier": "GCF_013177695.1",
    "organism": "Paraburkholderia solitsugae",
    "title": "Paraburkholderia solitsugae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Cornell University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013177695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13323986",
        "wgs_master": "WOEY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2675748",
        "species_taxid": "2675748",
        "organism_name": "Paraburkholderia solitsugae",
        "infraspecific_name": "strain=1N",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/05/27",
        "asm_name": "ASM1317769v1",
        "asm_submitter": "Cornell University",
        "gbrs_paired_asm": "GCA_013177695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/177/695/GCF_013177695.1_ASM1317769v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9667127",
        "genome_size_ungapped": "9667127",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "201",
        "contig_count": "201",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013177695.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "8873",
        "protein_coding_gene_count": "8474",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-05-27",
    "dateModified": "2020-05-27",
    "datePublished": "2020-05-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraburkholderia solitsugae"
        ],
        "sample_taxid": [
            "2675748"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Dryden"
        ],
        "sample_host_location_id": [],
        "data_size": "2.719 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9667127",
        "Number of Sequences": "201",
        "Longest Sequences (bp)": "260097",
        "N50 (bp)": "86399",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.3",
        "Number of CDSs": "8611",
        "Average Protein Length": "308.0",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paraburkholderia solitsugae",
                "strain": "strain=1N",
                "accession": "GCA_013177695.1",
                "taxid": 2675748,
                "species_taxid": 2675748,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3089,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paraburkholderia domus",
                "strain": "strain=LMG 31832",
                "accession": "GCA_905220705.1",
                "taxid": 2793075,
                "species_taxid": 2793075,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8371,
                "matched_fragments": 2021,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia elongata",
                "strain": "strain=5N",
                "accession": "GCA_013177735.1",
                "taxid": 2675747,
                "species_taxid": 2675747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.3396,
                "matched_fragments": 2116,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia polaris",
                "strain": "strain=RP-4-7",
                "accession": "GCA_012927345.1",
                "taxid": 2728848,
                "species_taxid": 2728848,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1399,
                "matched_fragments": 2031,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia madseniana",
                "strain": "strain=RP11",
                "accession": "GCA_009690905.1",
                "taxid": 2599607,
                "species_taxid": 2599607,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1238,
                "matched_fragments": 2116,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia nemoris",
                "strain": "strain=LMG 31836",
                "accession": "GCA_905221015.1",
                "taxid": 2793076,
                "species_taxid": 2793076,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6428,
                "matched_fragments": 1986,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia haematera",
                "strain": "strain=LMG 31837",
                "accession": "GCA_905220975.1",
                "taxid": 2793077,
                "species_taxid": 2793077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.5219,
                "matched_fragments": 1934,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia aspalathi",
                "strain": "strain=LMG 27731",
                "accession": "GCA_900116445.1",
                "taxid": 1324617,
                "species_taxid": 1324617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4212,
                "matched_fragments": 1998,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia caffeinilytica",
                "strain": "strain=CF1",
                "accession": "GCA_003368325.1",
                "taxid": 1761016,
                "species_taxid": 1761016,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2595,
                "matched_fragments": 1850,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia sediminicola",
                "strain": "strain=LMG 24238",
                "accession": "GCA_902859805.1",
                "taxid": 458836,
                "species_taxid": 458836,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2131,
                "matched_fragments": 1999,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia agricolaris",
                "strain": "strain=BaQS159",
                "accession": "GCA_009455635.1",
                "taxid": 2152888,
                "species_taxid": 2152888,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.474,
                "matched_fragments": 1911,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia kirstenboschensis",
                "strain": "strain=KB15",
                "accession": "GCA_001636975.1",
                "taxid": 1245436,
                "species_taxid": 1245436,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.063,
                "matched_fragments": 1197,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia podalyriae",
                "strain": "strain=WC7.3b",
                "accession": "GCA_014397785.1",
                "taxid": 1938811,
                "species_taxid": 1938811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8309,
                "matched_fragments": 1432,
                "total_fragments": 3126,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013177695.1",
                "gtdb_species": "s__Paraburkholderia sp013177695",
                "ani": 100.0,
                "matched_fragments": 3083,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900142905.1",
                "gtdb_species": "s__Paraburkholderia sp900142905",
                "ani": 94.5249,
                "matched_fragments": 2251,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_905220835.1",
                "gtdb_species": "s__Paraburkholderia sp905220835",
                "ani": 91.8299,
                "matched_fragments": 2008,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_013177735.1",
                "gtdb_species": "s__Paraburkholderia sp013177735",
                "ani": 91.3351,
                "matched_fragments": 2117,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012927345.1",
                "gtdb_species": "s__Paraburkholderia sp012927345",
                "ani": 91.1342,
                "matched_fragments": 2033,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009690905.1",
                "gtdb_species": "s__Paraburkholderia madseniana",
                "ani": 91.1327,
                "matched_fragments": 2115,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "98.82",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900230185.1",
                "gtdb_species": "s__Paraburkholderia sp900230185",
                "ani": 90.8375,
                "matched_fragments": 2130,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001634365.1",
                "gtdb_species": "s__Paraburkholderia sp001634365",
                "ani": 90.7338,
                "matched_fragments": 1783,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116445.1",
                "gtdb_species": "s__Paraburkholderia aspalathi",
                "ani": 90.4253,
                "matched_fragments": 1998,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.47",
                "min_intra_species_ani": "95.19",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCF_902859805.1",
                "gtdb_species": "s__Paraburkholderia sediminicola",
                "ani": 90.2288,
                "matched_fragments": 1997,
                "total_fragments": 3126,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.206,
        "cell_length": 0.138,
        "doubling_h": 0.0,
        "growth_tmp": 29.45,
        "optimum_tmp": 29.643,
        "optimum_ph": 6.11,
        "genome_size": 7672919.331,
        "gc_content": 62.985,
        "coding_genes": 7196.441,
        "rRNA16S_genes": 5.571,
        "tRNA_genes": 61.73,
        "gram_stain": 0.0,
        "sporulation": 0.035,
        "motility": 0.689,
        "range_salinity": 0.5,
        "facultative_respiration": 0.029,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.97,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.945,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.054,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paraburkholderia",
        "solitsugae"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}