{ "type": "genome", "identifier": "GCF_013177735.1", "organism": "Paraburkholderia elongata", "title": "Paraburkholderia elongata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cornell University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013177735.1", "bioproject": "PRJNA224116", "biosample": "SAMN13323985", "wgs_master": "WOEZ00000000.1", "refseq_category": "reference genome", "taxid": "2675747", "species_taxid": "2675747", "organism_name": "Paraburkholderia elongata", "infraspecific_name": "strain=5N", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/27", "asm_name": "ASM1317773v1", "asm_submitter": "Cornell University", "gbrs_paired_asm": "GCA_013177735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/177/735/GCF_013177735.1_ASM1317773v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11075029", "genome_size_ungapped": "11075029", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "353", "contig_count": "353", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013177735.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "10454", "protein_coding_gene_count": "9856", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-27", "dateModified": "2020-05-27", "datePublished": "2020-05-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia elongata" ], "sample_taxid": [ "2675747" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Dryden" ], "sample_host_location_id": [], "data_size": "3.119 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11075029", "Number of Sequences": "353", "Longest Sequences (bp)": "239310", "N50 (bp)": "64767", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.0", "Number of CDSs": "10217", "Average Protein Length": "290.8", "Coding Ratio (%)": "80.5", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia elongata", "strain": "strain=5N", "accession": "GCA_013177735.1", "taxid": 2675747, "species_taxid": 2675747, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3457, "total_fragments": 3509, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia polaris", "strain": "strain=RP-4-7", "accession": "GCA_012927345.1", "taxid": 2728848, "species_taxid": 2728848, "relation_to_type": "type", "validated": true, "ani": 92.0816, "matched_fragments": 1946, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 91.6619, "matched_fragments": 1911, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia madseniana", "strain": "strain=RP11", "accession": "GCA_009690905.1", "taxid": 2599607, "species_taxid": 2599607, "relation_to_type": "type", "validated": true, "ani": 91.5683, "matched_fragments": 2224, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia solitsugae", "strain": "strain=1N", "accession": "GCA_013177695.1", "taxid": 2675748, "species_taxid": 2675748, "relation_to_type": "type", "validated": true, "ani": 91.3809, "matched_fragments": 2106, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 91.075, "matched_fragments": 1902, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 90.884, "matched_fragments": 1948, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caffeinilytica", "strain": "strain=CGMCC 1.15103", "accession": "GCA_014640695.1", "taxid": 1761016, "species_taxid": 1761016, "relation_to_type": "type", "validated": true, "ani": 90.7941, "matched_fragments": 1822, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caffeinilytica", "strain": "strain=CF1", "accession": "GCA_003368325.1", "taxid": 1761016, "species_taxid": 1761016, "relation_to_type": "type", "validated": true, "ani": 90.7248, "matched_fragments": 1840, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia sediminicola", "strain": "strain=LMG 24238", "accession": "GCA_902859805.1", "taxid": 458836, "species_taxid": 458836, "relation_to_type": "type", "validated": true, "ani": 90.6875, "matched_fragments": 1917, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia lacunae", "strain": "strain=S27", "accession": "GCA_003353175.1", "taxid": 2211104, "species_taxid": 2211104, "relation_to_type": "type", "validated": true, "ani": 87.4234, "matched_fragments": 1747, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 84.0707, "matched_fragments": 1240, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 83.81, "matched_fragments": 1506, "total_fragments": 3509, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium pellucidum", "strain": "strain=BT25", "accession": 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