{ "type": "genome", "identifier": "GCF_013178945.1", "organism": "Bradyrhizobium aeschynomenes", "title": "Bradyrhizobium aeschynomenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yantai Institute of Coastal Zone Research", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013178945.1", "bioproject": "PRJNA224116", "biosample": "SAMN14852462", "wgs_master": "JABFDM000000000.1", "refseq_category": "reference genome", "taxid": "2734909", "species_taxid": "2734909", "organism_name": "Bradyrhizobium aeschynomenes", "infraspecific_name": "strain=83002", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/27", "asm_name": "ASM1317894v1", "asm_submitter": "Yantai Institute of Coastal Zone Research", "gbrs_paired_asm": "GCA_013178945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/178/945/GCF_013178945.1_ASM1317894v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7522254", "genome_size_ungapped": "7522254", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013178945.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "6818", "protein_coding_gene_count": "6686", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-27", "dateModified": "2020-05-27", "datePublished": "2020-05-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium aeschynomenes" ], "sample_taxid": [ "2734909" ], "sample_host_organism": [ "Aeschynomene indica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.064 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7522254", "Number of Sequences": "58", "Longest Sequences (bp)": "1045725", "N50 (bp)": "570436", "Gap Ratio (%)": "0.000266", "GCcontent (%)": "65.4", "Number of CDSs": "6792", "Average Protein Length": "314.4", "Coding Ratio (%)": "85.2", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 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2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium tropiciagri", "strain": "strain=SEMIA 6148", "accession": "GCA_001189845.1", "taxid": 312253, "species_taxid": 312253, "relation_to_type": "type", "validated": true, "ani": 82.0358, "matched_fragments": 1276, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", "taxid": 2755406, "species_taxid": 2755406, "relation_to_type": "type", "validated": true, "ani": 81.9968, "matched_fragments": 1329, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 81.9609, "matched_fragments": 1257, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium embrapense", "strain": "strain=SEMIA 6208", "accession": "GCA_001189235.2", "taxid": 630921, "species_taxid": 630921, "relation_to_type": "type", "validated": true, "ani": 81.9394, "matched_fragments": 1263, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 81.8933, "matched_fragments": 1198, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 81.8786, "matched_fragments": 1189, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium zhanjiangense", "strain": "strain=CCBAU 51778", "accession": "GCA_004114935.1", "taxid": 1325107, "species_taxid": 1325107, "relation_to_type": "type", "validated": true, "ani": 81.809, "matched_fragments": 1362, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium neotropicale", "strain": "strain=BR 10247", "accession": "GCA_001641695.1", "taxid": 1497615, "species_taxid": 1497615, "relation_to_type": "type", "validated": true, "ani": 81.7956, "matched_fragments": 1327, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium hipponense", "strain": "strain=aSej3", "accession": "GCA_008123965.1", "taxid": 2605638, "species_taxid": 2605638, "relation_to_type": "type", "validated": true, "ani": 81.6589, "matched_fragments": 1259, "total_fragments": 2490, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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