{ "type": "genome", "identifier": "GCF_013201645.1", "organism": "Campylobacter corcagiensis", "title": "Campylobacter corcagiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA, ARS, WRRC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013201645.1", "bioproject": "PRJNA224116", "biosample": "SAMN10884418", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1448857", "species_taxid": "1448857", "organism_name": "Campylobacter corcagiensis", "infraspecific_name": "strain=LMG 27932", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/01", "asm_name": "ASM1320164v1", "asm_submitter": "USDA, ARS, WRRC", "gbrs_paired_asm": "GCA_013201645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/201/645/GCF_013201645.1_ASM1320164v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1694495", "genome_size_ungapped": "1694495", "gc_percent": "32.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013201645.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "1789", "protein_coding_gene_count": "1725", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-01", "dateModified": "2020-06-01", "datePublished": "2020-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter corcagiensis" ], "sample_taxid": [ "1448857" ], "sample_host_organism": [ "Macaca silenus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Ireland: Cork" ], "sample_host_location_id": [], "data_size": "0.461 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1694495", "Number of Sequences": "2", "Longest Sequences (bp)": "1655616", "N50 (bp)": "1655616", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.9", "Number of CDSs": "1736", "Average Protein Length": "300.9", "Coding Ratio (%)": "92.5", "Number of rRNAs": "6", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter corcagiensis", "strain": "strain=LMG 27932", "accession": "GCA_013201645.1", "taxid": 1448857, "species_taxid": 1448857, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 562, "total_fragments": 563, 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"below_threshold" }, { "organism_name": "Campylobacter ureolyticus", "strain": "strain=DSM 20703", "accession": "GCA_000374605.1", "taxid": 827, "species_taxid": 827, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9019, "matched_fragments": 217, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter geochelonis", "strain": "strain=LMG 29375", "accession": "GCA_013201685.1", "taxid": 1780362, "species_taxid": 1780362, "relation_to_type": "type", "validated": true, "ani": 77.665, "matched_fragments": 162, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter lanienae", "strain": "strain=NCTC 13004", "accession": "GCA_002139935.1", "taxid": 75658, "species_taxid": 75658, "relation_to_type": "type", "validated": true, "ani": 77.4005, "matched_fragments": 64, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter blaseri", "strain": "strain=LMG 30333", "accession": "GCA_013201895.1", "taxid": 2042961, "species_taxid": 2042961, "relation_to_type": "type", "validated": true, "ani": 77.3997, "matched_fragments": 172, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter geochelonis", "strain": "strain=RC20", "accession": "GCA_900063025.1", "taxid": 1780362, "species_taxid": 1780362, "relation_to_type": "type", "validated": true, "ani": 77.3434, "matched_fragments": 157, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter jejuni", "strain": "strain=NCTC11351", "accession": "GCA_001457695.1", "taxid": 197, "species_taxid": 197, "relation_to_type": "type", "validated": true, "ani": 77.3396, "matched_fragments": 58, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter blaseri", "strain": "strain=17S00004-5", "accession": "GCA_003015205.1", "taxid": 2042961, "species_taxid": 2042961, "relation_to_type": "type", "validated": true, "ani": 77.2186, "matched_fragments": 169, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter hepaticus", "strain": "strain=HV10", "accession": "GCA_001687475.2", "taxid": 1813019, "species_taxid": 1813019, "relation_to_type": "type", "validated": true, "ani": 77.1993, "matched_fragments": 53, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter coli", "strain": "strain=LMG 9860", "accession": "GCA_000254135.2", "taxid": 195, "species_taxid": 195, "relation_to_type": "type", "validated": true, "ani": 76.475, "matched_fragments": 53, "total_fragments": 563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter jejuni subsp. jejuni", "strain": "strain=CCUG 11284", "accession": "GCA_008802045.1", "taxid": 32022, 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009690845.1", "gtdb_species": "s__Campylobacter_B portucalensis", "ani": 77.7679, "matched_fragments": 175, "total_fragments": 563, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008245005.1", "gtdb_species": "s__Campylobacter_B sputorum", "ani": 77.6702, "matched_fragments": 123, "total_fragments": 563, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "98.05", 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