{ "type": "genome", "identifier": "GCF_013201825.1", "organism": "Halarcobacter ebronensis", "title": "Halarcobacter ebronensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA, ARS, WRRC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013201825.1", "bioproject": "PRJNA224116", "biosample": "SAMN10884412", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1462615", "species_taxid": "1462615", "organism_name": "Halarcobacter ebronensis", "infraspecific_name": "strain=LMG 27922", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/01", "asm_name": "ASM1320182v1", "asm_submitter": "USDA, ARS, WRRC", "gbrs_paired_asm": "GCA_013201825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/201/825/GCF_013201825.1_ASM1320182v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3170683", "genome_size_ungapped": "3170683", "gc_percent": "29.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013201825.1-RS_2024_03_22", "annotation_date": "2024-03-22", "total_gene_count": "3096", "protein_coding_gene_count": "3032", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-01", "dateModified": "2020-06-01", "datePublished": "2020-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Halarcobacter ebronensis" ], "sample_taxid": [ "1462615" ], "sample_host_organism": [ "Mytilus galloprovincialis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Catalonia" ], "sample_host_location_id": [], "data_size": "0.847 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3170683", "Number of Sequences": "1", "Longest Sequences (bp)": "3170683", "N50 (bp)": "3170683", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.3", "Number of CDSs": "3052", "Average Protein Length": "321.6", "Coding Ratio (%)": "92.9", "Number of rRNAs": "6", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halarcobacter ebronensis", "strain": "strain=LMG 27922", "accession": "GCA_013201825.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1050, "total_fragments": 1056, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=CECT 8441", "accession": "GCA_004116565.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 99.9744, "matched_fragments": 1016, "total_fragments": 1056, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_006459125.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 80.3471, "matched_fragments": 610, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Halarcobacter] arenosus", "strain": "strain=CAU 1517", "accession": "GCA_005771535.1", "taxid": 2576037, "species_taxid": 2576037, "relation_to_type": "type", "validated": true, "ani": 80.1985, "matched_fragments": 503, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter anaerophilus", "strain": "strain=DSM 24636", "accession": "GCA_004116345.1", "taxid": 877500, "species_taxid": 877500, "relation_to_type": "type", "validated": true, "ani": 80.1938, "matched_fragments": 607, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 80.1161, "matched_fragments": 490, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=CECT 7696", "accession": "GCA_003544935.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.4058, "matched_fragments": 435, "total_fragments": 1056, "ani_threshold": 95, "status": "below_threshold" }, { 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