{ "type": "genome", "identifier": "GCF_013240295.1", "organism": "Mesorhizobium sediminum", "title": "Mesorhizobium sediminum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "chungang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013240295.1", "bioproject": "PRJNA224116", "biosample": "SAMN14826400", "wgs_master": "JABETK000000000.1", "refseq_category": "na", "taxid": "1849104", "species_taxid": "1849104", "organism_name": "Mesorhizobium sediminum", "infraspecific_name": "strain=KCTC 42205", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/02", "asm_name": "ASM1324029v1", "asm_submitter": "chungang university", "gbrs_paired_asm": "GCA_013240295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/240/295/GCF_013240295.1_ASM1324029v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6135496", "genome_size_ungapped": "6135496", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013240295.1-RS_2024_09_29", "annotation_date": "2024-09-29", "total_gene_count": "6300", "protein_coding_gene_count": "5436", "non_coding_gene_count": "54", "pubmed_id": "27535803" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-02", "dateModified": "2020-06-02", "datePublished": "2020-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesorhizobium sediminum" ], "sample_taxid": [ "1849104" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "1.706 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6135496", "Number of Sequences": "9", "Longest Sequences (bp)": "2349206", "N50 (bp)": "2224989", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.3", "Number of CDSs": "6645", "Average Protein Length": "272.8", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesorhizobium sediminum", "strain": "strain=KCTC 42205", "accession": "GCA_013240295.1", "taxid": 1849104, "species_taxid": 1849104, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2038, "total_fragments": 2041, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aminobacter aganoensis", "strain": "strain=DSM 7051", "accession": "GCA_014206975.1", "taxid": 83264, "species_taxid": 83264, "relation_to_type": "type", "validated": true, "ani": 79.69, "matched_fragments": 672, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 79.6267, "matched_fragments": 704, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium carbonis", "strain": "strain=B2.3", "accession": "GCA_003970795.1", "taxid": 2495581, "species_taxid": 2495581, "relation_to_type": "type", "validated": true, "ani": 79.5968, "matched_fragments": 622, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium 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7048", "accession": "GCA_004341645.1", "taxid": 83263, "species_taxid": 83263, "relation_to_type": "type", "validated": true, "ani": 79.2284, "matched_fragments": 647, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium metallidurans", "strain": "strain=STM 2683", "accession": "GCA_000350085.1", "taxid": 489722, "species_taxid": 489722, "relation_to_type": "type", "validated": true, "ani": 79.2239, "matched_fragments": 607, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium oceanicum", "strain": "strain=B7", "accession": "GCA_001889605.1", "taxid": 1670800, "species_taxid": 1670800, "relation_to_type": "type", "validated": true, "ani": 79.1729, "matched_fragments": 645, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 79.1712, "matched_fragments": 591, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquamicrobium defluvii", "strain": "strain=DSM 11603", "accession": "GCA_004363725.1", "taxid": 69279, "species_taxid": 69279, "relation_to_type": "type", "validated": true, "ani": 79.1017, "matched_fragments": 529, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium hawassense", "strain": "strain=AC99b", "accession": "GCA_003289945.1", "taxid": 1209954, "species_taxid": 1209954, "relation_to_type": "type", "validated": true, "ani": 79.0962, "matched_fragments": 684, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium carmichaelinearum", "strain": "strain=ICMP 18942", "accession": "GCA_900199455.1", "taxid": 1208188, "species_taxid": 1208188, "relation_to_type": "type", "validated": true, "ani": 79.0862, "matched_fragments": 675, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium opportunistum", "strain": "strain=WSM2075", "accession": "GCA_000176035.2", "taxid": 593909, "species_taxid": 593909, "relation_to_type": "type", "validated": true, "ani": 79.0716, "matched_fragments": 663, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sanjuanii", "strain": "strain=BSA136", "accession": "GCA_002529485.1", "taxid": 2037900, "species_taxid": 2037900, "relation_to_type": "type", "validated": true, "ani": 79.0326, "matched_fragments": 601, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquamicrobium lusatiense", "strain": "strain=DSM 11099", "accession": "GCA_014201615.1", "taxid": 89772, "species_taxid": 89772, "relation_to_type": "type", "validated": true, "ani": 79.0155, "matched_fragments": 485, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sophorae", "strain": "strain=ICMP 19535", "accession": "GCA_002270415.1", "taxid": 1300294, "species_taxid": 1300294, "relation_to_type": "type", "validated": true, "ani": 79.0122, "matched_fragments": 647, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", "validated": true, "ani": 78.9705, "matched_fragments": 665, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sangaii", "strain": "strain=DSM 100039", "accession": "GCA_014207355.1", "taxid": 505389, "species_taxid": 505389, "relation_to_type": "type", "validated": true, "ani": 78.8441, "matched_fragments": 646, "total_fragments": 2041, 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"organism_name": "Aquamicrobium zhengzhouense", "strain": "strain=cd-1", "accession": "GCA_016124105.1", "taxid": 2781738, "species_taxid": 2781738, "relation_to_type": "type", "validated": true, "ani": 78.2706, "matched_fragments": 423, "total_fragments": 2041, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013240295.1", "gtdb_species": "s__Aquamicrobium_A sediminum", "ani": 100.0, "matched_fragments": 2038, "total_fragments": 2041, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aquamicrobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_008180155.1", "gtdb_species": "s__Aquamicrobium_A microcysteis", 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