{ "type": "genome", "identifier": "GCF_013249015.1", "organism": "Rathayibacter agropyri", "title": "Rathayibacter agropyri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013249015.1", "bioproject": "PRJNA224116", "biosample": "SAMN15006076", "wgs_master": "JABRPL000000000.1", "refseq_category": "reference genome", "taxid": "1634927", "species_taxid": "1634927", "organism_name": "Rathayibacter agropyri", "infraspecific_name": "strain=VKM Ac-2828", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/02", "asm_name": "ASM1324901v1", "asm_submitter": "PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS", "gbrs_paired_asm": "GCA_013249015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/249/015/GCF_013249015.1_ASM1324901v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3044700", "genome_size_ungapped": "3044400", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013249015.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "2914", "protein_coding_gene_count": "2834", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-02", "dateModified": "2020-06-02", "datePublished": "2020-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Rathayibacter agropyri" ], "sample_taxid": [ "1634927" ], "sample_host_organism": [ "Pascopyrum smithii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.833 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3044700", "Number of Sequences": "25", "Longest Sequences (bp)": "1192474", "N50 (bp)": "656029", "Gap Ratio (%)": "0.009853", "GCcontent (%)": "68.1", "Number of CDSs": "2931", "Average Protein Length": "305.7", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": 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