{ "type": "genome", "identifier": "GCF_013277735.1", "organism": "Photorhabdus heterorhabditis subsp. aluminescens", "title": "Photorhabdus heterorhabditis subsp. aluminescens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Neuchatel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013277735.1", "bioproject": "PRJNA224116", "biosample": "SAMN14615541", "wgs_master": "JABBCS000000000.1", "refseq_category": "na", "taxid": "2805094", "species_taxid": "880156", "organism_name": "Photorhabdus heterorhabditis subsp. aluminescens", "infraspecific_name": "strain=Q614", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/04", "asm_name": "ASM1327773v1", "asm_submitter": "University of Neuchatel", "gbrs_paired_asm": "GCA_013277735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/277/735/GCF_013277735.1_ASM1327773v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4974579", "genome_size_ungapped": "4974579", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "268", "contig_count": "268", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013277735.1-RS_2024_07_20", "annotation_date": "2024-07-20", "total_gene_count": "4828", "protein_coding_gene_count": "4423", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-04", "dateModified": "2020-06-04", "datePublished": "2020-06-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Photorhabdus heterorhabditis subsp. aluminescens" ], "sample_taxid": [ "2805094" ], 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"matched_fragments": 1123, "total_fragments": 1563, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus hindustanensis", "strain": "strain=H1", "accession": "GCA_002968995.1", "taxid": 2918802, "species_taxid": 2918802, "relation_to_type": "type", "validated": true, "ani": 85.4894, "matched_fragments": 1125, "total_fragments": 1563, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018448905.1", "gtdb_species": "s__Photorhabdus heterorhabditis", "ani": 97.2581, "matched_fragments": 1344, "total_fragments": 1563, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Photorhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", 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