{
    "type": "genome",
    "identifier": "GCF_013282625.1",
    "organism": "Thiomicrorhabdus xiamenensis",
    "title": "Thiomicrorhabdus xiamenensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Third Institute of Oceanography, Ministry of Natural Resources, People's Republic of China",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013282625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN15015224",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2739063",
        "species_taxid": "2739063",
        "organism_name": "Thiomicrorhabdus xiamenensis",
        "infraspecific_name": "strain=G2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/06",
        "asm_name": "ASM1328262v1",
        "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources, People's Republic of China",
        "gbrs_paired_asm": "GCA_013282625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/282/625/GCF_013282625.1_ASM1328262v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2594948",
        "genome_size_ungapped": "2594948",
        "gc_percent": "48.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013282625.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2404",
        "protein_coding_gene_count": "2334",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-06",
    "dateModified": "2020-06-06",
    "datePublished": "2020-06-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiomicrorhabdus xiamenensis"
        ],
        "sample_taxid": [
            "2739063"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:xiamen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.736 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.62,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2594948",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2594948",
        "N50 (bp)": "2594948",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.4",
        "Number of CDSs": "2361",
        "Average Protein Length": "324.0",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "9",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thiomicrorhabdus xiamenensis",
                "strain": "strain=G2",
                "accession": "GCA_013282625.1",
                "taxid": 2739063,
                "species_taxid": 2739063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 862,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thiomicrorhabdus heinhorstiae",
                "strain": "strain=HH1",
                "accession": "GCA_013391765.2",
                "taxid": 2748010,
                "species_taxid": 2748010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2562,
                "matched_fragments": 219,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus indica",
                "strain": "strain=13-15A",
                "accession": "GCA_004293625.1",
                "taxid": 2267253,
                "species_taxid": 2267253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2486,
                "matched_fragments": 129,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiosulfatimonas sediminis",
                "strain": "strain=aks77",
                "accession": "GCA_011398355.1",
                "taxid": 2675054,
                "species_taxid": 2675054,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9866,
                "matched_fragments": 198,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus immobilis",
                "strain": "strain=Am19",
                "accession": "GCA_021654855.1",
                "taxid": 2791037,
                "species_taxid": 2791037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8642,
                "matched_fragments": 114,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenovibrio marinus",
                "strain": "strain=DSM 11271",
                "accession": "GCA_000711315.1",
                "taxid": 28885,
                "species_taxid": 28885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4821,
                "matched_fragments": 82,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus sediminis",
                "strain": "strain=G1",
                "accession": "GCA_005885815.1",
                "taxid": 2580412,
                "species_taxid": 2580412,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2996,
                "matched_fragments": 167,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenovibrio marinus",
                "strain": "strain=MH-110",
                "accession": "GCA_013340845.1",
                "taxid": 28885,
                "species_taxid": 28885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2341,
                "matched_fragments": 78,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiomicrorhabdus cannonii",
                "strain": "strain=HH3",
                "accession": "GCA_013391695.1",
                "taxid": 2748011,
                "species_taxid": 2748011,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7579,
                "matched_fragments": 158,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenovibrio marinus",
                "strain": "strain=MH-110",
                "accession": "GCA_000696325.1",
                "taxid": 28885,
                "species_taxid": 28885,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6371,
                "matched_fragments": 79,
                "total_fragments": 864,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.62,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013282625.1",
                "gtdb_species": "s__Thiomicrorhabdus xiamenensis",
                "ani": 100.0,
                "matched_fragments": 863,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017571475.1",
                "gtdb_species": "s__Thiomicrorhabdus sp017571475",
                "ani": 91.8619,
                "matched_fragments": 788,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004293625.1",
                "gtdb_species": "s__Thiomicrorhabdus indica",
                "ani": 79.3745,
                "matched_fragments": 130,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017571465.1",
                "gtdb_species": "s__Thiomicrorhabdus sp017571465",
                "ani": 79.2863,
                "matched_fragments": 231,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013391765.2",
                "gtdb_species": "s__Thiomicrorhabdus sp013391765",
                "ani": 79.2562,
                "matched_fragments": 219,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011398355.1",
                "gtdb_species": "s__Thiomicrorhabdus sp011398355",
                "ani": 79.0847,
                "matched_fragments": 198,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005885815.1",
                "gtdb_species": "s__Thiomicrorhabdus sediminis",
                "ani": 78.3828,
                "matched_fragments": 169,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013340845.1",
                "gtdb_species": "s__Hydrogenovibrio marinus",
                "ani": 78.2341,
                "matched_fragments": 78,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000744875.1",
                "gtdb_species": "s__Hydrogenovibrio sp000744875",
                "ani": 78.1635,
                "matched_fragments": 79,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Hydrogenovibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013391695.1",
                "gtdb_species": "s__Thiomicrorhabdus sp013391695",
                "ani": 77.7612,
                "matched_fragments": 157,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014763835.1",
                "gtdb_species": "s__Thiomicrorhabdus sp014763835",
                "ani": 77.6618,
                "matched_fragments": 112,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.61",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002299245.1",
                "gtdb_species": "s__Thiomicrorhabdus sp002299245",
                "ani": 76.9937,
                "matched_fragments": 68,
                "total_fragments": 864,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiomicrospirales;f__Thiomicrospiraceae;g__Thiomicrorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.26,
        "cell_length": 0.153,
        "doubling_h": 0.363,
        "growth_tmp": 23.0,
        "optimum_tmp": 14.337,
        "optimum_ph": 7.875,
        "genome_size": 2497958.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thiomicrorhabdus",
        "xiamenensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}