{ "type": "genome", "identifier": "GCF_013282745.1", "organism": "Yersinia bercovieri ATCC 43970", "title": "Yersinia bercovieri ATCC 43970", "description": "na", "data type": "Genome sequencing and assembly", "organization": "PulseNet Next Generation Subtyping Methods Unit", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013282745.1", "bioproject": "PRJNA224116", "biosample": "SAMN15015918", "wgs_master": "na", "refseq_category": "na", "taxid": "349968", "species_taxid": "634", "organism_name": "Yersinia bercovieri ATCC 43970", "infraspecific_name": "strain=ATCC 43970", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/06", "asm_name": "ASM1328274v1", "asm_submitter": "PulseNet Next Generation Subtyping Methods Unit", "gbrs_paired_asm": "GCA_013282745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/282/745/GCF_013282745.1_ASM1328274v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4401367", "genome_size_ungapped": "4401167", "gc_percent": "49.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013282745.1-RS_2024_03_30", "annotation_date": "2024-03-30", "total_gene_count": "4036", "protein_coding_gene_count": "3815", "non_coding_gene_count": "118", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-06", "dateModified": "2020-06-06", "datePublished": "2020-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia bercovieri ATCC 43970" ], "sample_taxid": [ "349968" ], "sample_host_organism": [ "Missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Missing" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "1.250 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4401167", "Number of Sequences": "2", "Longest Sequences (bp)": "4327240", "N50 (bp)": "4327240", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.9", "Number of CDSs": "3932", "Average Protein Length": "316.1", "Coding Ratio (%)": "84.7", "Number of rRNAs": "22", "Number of tRNAs": "80", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia bercovieri", "strain": "strain=ATCC 43970", "accession": "GCA_013282745.1", "taxid": 634, "species_taxid": 634, 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