{ "type": "genome", "identifier": "GCF_013283665.1", "organism": "Ensifer sesbaniae", "title": "Ensifer sesbaniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Firenze", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013283665.1", "bioproject": "PRJNA224116", "biosample": "SAMN14518350", "wgs_master": "JABEKU000000000.1", "refseq_category": "reference genome", "taxid": "1214071", "species_taxid": "1214071", "organism_name": "Ensifer sesbaniae", "infraspecific_name": "strain=CCBAU 65729", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/06", "asm_name": "ASM1328366v1", "asm_submitter": "University of Firenze", "gbrs_paired_asm": "GCA_013283665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/283/665/GCF_013283665.1_ASM1328366v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6897201", "genome_size_ungapped": "6895946", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013283665.1-RS_2024_09_28", "annotation_date": "2024-09-28", "total_gene_count": "6588", "protein_coding_gene_count": "6286", "non_coding_gene_count": "60", "pubmed_id": "33283865" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-06", "dateModified": "2020-06-06", "datePublished": "2020-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Ensifer sesbaniae" ], "sample_taxid": [ "1214071" ], "sample_host_organism": [ "Sesbania cannabina" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Dehong" ], "sample_host_location_id": [], "data_size": "1.918 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6897201", "Number of Sequences": "5", "Longest Sequences (bp)": "3711528", "N50 (bp)": "3711528", "Gap Ratio (%)": "0.018196", "GCcontent (%)": "62.1", "Number of CDSs": "6526", "Average Protein Length": "301.8", "Coding Ratio (%)": "85.7", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ensifer sesbaniae", "strain": "strain=CCBAU 65729", "accession": "GCA_013283665.1", "taxid": 1214071, "species_taxid": 1214071, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2296, "total_fragments": 2297, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA205", "accession": "GCA_009601405.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 82.248, "matched_fragments": 1205, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA 205", "accession": "GCA_001461695.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 82.2208, "matched_fragments": 1174, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=NBRC 14780", "accession": "GCA_006539605.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 82.2132, "matched_fragments": 1154, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer 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"GCA_006539625.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 81.6978, "matched_fragments": 1052, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=USDA1002", "accession": "GCA_009601385.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 81.5974, "matched_fragments": 1088, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 81.3421, "matched_fragments": 1014, "total_fragments": 2297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, 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