{ "type": "genome", "identifier": "GCF_013283875.1", "organism": "Mucilaginibacter mali", "title": "Mucilaginibacter mali", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology, KRIBB", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013283875.1", "bioproject": "PRJNA224116", "biosample": "SAMN15042436", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2740462", "species_taxid": "2740462", "organism_name": "Mucilaginibacter mali", "infraspecific_name": "strain=G2-14", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/07", "asm_name": "ASM1328387v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology, KRIBB", "gbrs_paired_asm": "GCA_013283875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/283/875/GCF_013283875.1_ASM1328387v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6044097", "genome_size_ungapped": "6044097", "gc_percent": "46.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013283875.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5184", "protein_coding_gene_count": "5119", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-07", "dateModified": "2020-06-07", "datePublished": "2020-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter mali" ], "sample_taxid": [ "2740462" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Chungju-si" ], "sample_host_location_id": [], "data_size": "1.707 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6044097", "Number of Sequences": "1", "Longest Sequences (bp)": "6044097", "N50 (bp)": "6044097", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.4", "Number of CDSs": "5091", "Average Protein Length": "347.6", "Coding Ratio (%)": "87.8", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter mali", "strain": "strain=G2-14", "accession": "GCA_013283875.1", "taxid": 2740462, "species_taxid": 2740462, 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95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter galii", "strain": "strain=CCM 8711", "accession": "GCA_014635825.1", "taxid": 2005073, "species_taxid": 2005073, "relation_to_type": "type", "validated": true, "ani": 77.3093, "matched_fragments": 265, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2267, "matched_fragments": 359, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 77.215, "matched_fragments": 263, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 77.191, "matched_fragments": 346, "total_fragments": 2014, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013283875.1", "gtdb_species": "s__Mucilaginibacter mali", "ani": 100.0, "matched_fragments": 2012, "total_fragments": 2014, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_015221995.1", "gtdb_species": "s__Mucilaginibacter boryungensis", 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