{ "type": "genome", "identifier": "GCF_013285155.1", "organism": "Winogradskyella undariae", "title": "Winogradskyella undariae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013285155.1", "bioproject": "PRJNA224116", "biosample": "SAMN15082204", "wgs_master": "JABTEL000000000.1", "refseq_category": "reference genome", "taxid": "1285465", "species_taxid": "1285465", "organism_name": "Winogradskyella undariae", "infraspecific_name": "strain=CCUG 63832", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/07", "asm_name": "ASM1328515v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_013285155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/285/155/GCF_013285155.1_ASM1328515v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4198086", "genome_size_ungapped": "4198086", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "60", "contig_count": "60", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013285155.1-RS_2024_07_23", "annotation_date": "2024-07-23", "total_gene_count": "3742", "protein_coding_gene_count": "3677", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-07", "dateModified": "2020-06-07", "datePublished": "2020-06-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Winogradskyella undariae" ], "sample_taxid": [ "1285465" ], "sample_host_organism": [ "Undaria pinnatifida" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Wando" ], "sample_host_location_id": [], "data_size": "1.165 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4198086", "Number of Sequences": "60", "Longest Sequences (bp)": "566947", "N50 (bp)": "261864", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.8", "Number of CDSs": "3692", "Average Protein Length": "335.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Winogradskyella undariae", "strain": "strain=CCUG 63832", "accession": "GCA_013285155.1", "taxid": 1285465, "species_taxid": 1285465, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1371, "total_fragments": 1372, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Winogradskyella wichelsiae", "strain": "strain=Z738", "accession": "GCA_013403925.1", "taxid": 2697007, "species_taxid": 2697007, "relation_to_type": "type", "validated": true, "ani": 89.8942, "matched_fragments": 1045, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 82.4726, "matched_fragments": 813, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella costae", "strain": "strain=Z3138", "accession": "GCA_013403865.1", "taxid": 2697008, "species_taxid": 2697008, "relation_to_type": "type", "validated": true, "ani": 82.3318, "matched_fragments": 826, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella psychrotolerans", "strain": "strain=RS-3", "accession": "GCA_000427335.1", "taxid": 1344585, "species_taxid": 1344585, "relation_to_type": "type", "validated": true, "ani": 81.8775, "matched_fragments": 819, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella helgolandensis", "strain": "strain=Z963", "accession": "GCA_013404085.1", "taxid": 2697010, "species_taxid": 2697010, "relation_to_type": "type", "validated": true, "ani": 81.8001, "matched_fragments": 855, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 81.5391, "matched_fragments": 837, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella thalassocola", "strain": "strain=DSM 15363", "accession": "GCA_900099995.1", "taxid": 262004, "species_taxid": 262004, "relation_to_type": "type", "validated": true, "ani": 81.4363, "matched_fragments": 803, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 80.4803, "matched_fragments": 698, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.3972, "matched_fragments": 198, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.257, "matched_fragments": 228, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 77.2235, "matched_fragments": 198, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 77.0953, "matched_fragments": 88, "total_fragments": 1372, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": 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