{ "type": "genome", "identifier": "GCF_013307435.2", "organism": "Microvirga terrae", "title": "Microvirga terrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "chungang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013307435.2", "bioproject": "PRJNA224116", "biosample": "SAMN14987152", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2740529", "species_taxid": "2740529", "organism_name": "Microvirga terrae", "infraspecific_name": "strain=R24", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/31", "asm_name": "ASM1330743v2", "asm_submitter": "chungang university", "gbrs_paired_asm": "GCA_013307435.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/307/435/GCF_013307435.2_ASM1330743v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6129832", "genome_size_ungapped": "6129832", "gc_percent": "64.000000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013307435.2-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "5694", "protein_coding_gene_count": "5521", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-31", "dateModified": "2022-08-31", "datePublished": "2022-08-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Microvirga terrae" ], "sample_taxid": [ "2740529" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yeong-wol" ], "sample_host_location_id": [], "data_size": "1.704 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6129832", "Number of Sequences": "4", "Longest Sequences (bp)": "5295221", "N50 (bp)": "5295221", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "5837", "Average Protein Length": "295.5", "Coding Ratio (%)": "84.4", "Number of rRNAs": "12", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga mediterraneensis", "strain": "strain=Marseille-Q2068", "accession": "GCA_013520865.1", "taxid": 2754695, "species_taxid": 2754695, "relation_to_type": "type", "validated": true, "ani": 86.0785, "matched_fragments": 1203, "total_fragments": 2042, "ani_threshold": 95, "status": 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ossetica", "strain": "strain=V5/3M", "accession": "GCA_002741015.1", "taxid": 1882682, "species_taxid": 1882682, "relation_to_type": "type", "validated": true, "ani": 84.5953, "matched_fragments": 1347, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga zambiensis", "strain": "strain=WSM3693", "accession": "GCA_016735695.1", "taxid": 1402137, "species_taxid": 1402137, "relation_to_type": "type", "validated": true, "ani": 84.4011, "matched_fragments": 1245, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga arabica", "strain": "strain=SV2184P", "accession": "GCA_016811235.1", "taxid": 1128671, "species_taxid": 1128671, "relation_to_type": "type", "validated": true, "ani": 84.2106, "matched_fragments": 1084, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 84.1364, "matched_fragments": 933, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga soli", "strain": "strain=R491", "accession": "GCA_016734765.1", "taxid": 1854496, "species_taxid": 1854496, "relation_to_type": "type", "validated": true, "ani": 84.0008, "matched_fragments": 1134, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga aerilata", "strain": "strain=5420S-16", "accession": "GCA_016743775.1", "taxid": 670292, "species_taxid": 670292, "relation_to_type": "type", "validated": true, "ani": 83.992, "matched_fragments": 1117, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga pakistanensis", "strain": "strain=NCCP-1258", "accession": "GCA_004458765.1", "taxid": 1682650, "species_taxid": 1682650, "relation_to_type": "type", "validated": true, "ani": 82.5372, "matched_fragments": 930, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga roseola", "strain": "strain=SM2", "accession": "GCA_020866965.1", "taxid": 2883126, "species_taxid": 2883126, "relation_to_type": "type", "validated": true, "ani": 82.4181, "matched_fragments": 908, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 82.1802, "matched_fragments": 861, "total_fragments": 2042, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga makkahensis", "strain": "strain=KCTC 23863", "accession": "GCA_009830105.1", "taxid": 1128670, "species_taxid": 1128670, "relation_to_type": "type", "validated": true, "ani": 81.8642, 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