{ "type": "genome", "identifier": "GCF_013315265.1", "organism": "Sulfitobacter algicola", "title": "Sulfitobacter algicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013315265.1", "bioproject": "PRJNA224116", "biosample": "SAMN15064328", "wgs_master": "JABUFE000000000.1", "refseq_category": "reference genome", "taxid": "2614809", "species_taxid": "2614809", "organism_name": "Sulfitobacter algicola", "infraspecific_name": "strain=1151", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/09", "asm_name": "ASM1331526v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_013315265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/315/265/GCF_013315265.1_ASM1331526v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3966869", "genome_size_ungapped": "3966869", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013315265.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "4030", "protein_coding_gene_count": "3917", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-09", "dateModified": "2020-06-09", "datePublished": "2020-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter algicola" ], "sample_taxid": [ "2614809" ], "sample_host_organism": [ "green algae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: coastal seawater of Weihai" ], "sample_host_location_id": [], "data_size": "1.130 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3966869", "Number of Sequences": "70", "Longest Sequences (bp)": "758677", "N50 (bp)": "224174", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.8", "Number of CDSs": "4001", "Average Protein Length": "297.0", "Coding Ratio (%)": "89.9", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseobacter litoralis", "strain": "strain=Och 149", "accession": "GCA_000154785.2", "taxid": 42443, "species_taxid": 42443, "relation_to_type": "type", "validated": true, "ani": 77.2984, "matched_fragments": 132, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius marisflavi", "strain": "strain=DSM 29327", "accession": "GCA_900142625.1", "taxid": 1054996, "species_taxid": 1054996, "relation_to_type": "type", "validated": true, "ani": 77.0838, "matched_fragments": 136, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga dicentrarchi", "strain": "strain=YLY04", "accession": "GCA_003316635.1", "taxid": 2250573, "species_taxid": 2250573, "relation_to_type": "type", "validated": true, "ani": 76.9703, "matched_fragments": 99, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius litorisediminis", "strain": "strain=CECT 8287", "accession": "GCA_900172295.1", "taxid": 1312363, "species_taxid": 1312363, "relation_to_type": "type", "validated": true, "ani": 76.9552, "matched_fragments": 127, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 76.9315, "matched_fragments": 171, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius gaetbuli", "strain": "strain=CECT 8370", "accession": "GCA_900172365.1", "taxid": 1356575, "species_taxid": 1356575, "relation_to_type": "type", "validated": true, "ani": 76.8706, "matched_fragments": 127, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": "type", "validated": true, "ani": 76.848, "matched_fragments": 85, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagimonas varians", "strain": "strain=DSM 23678", "accession": "GCA_003208435.1", "taxid": 696760, "species_taxid": 696760, "relation_to_type": "type", "validated": true, "ani": 76.8386, "matched_fragments": 102, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium pelagium", "strain": "strain=JN33", "accession": "GCA_002285415.1", "taxid": 2029103, "species_taxid": 2029103, "relation_to_type": "type", "validated": true, "ani": 76.7872, "matched_fragments": 99, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tateyamaria pelophila", "strain": "strain=DSM 17270", "accession": "GCA_019966495.1", "taxid": 328415, "species_taxid": 328415, "relation_to_type": "type", "validated": true, "ani": 76.761, "matched_fragments": 122, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 76.7035, "matched_fragments": 97, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 76.6887, "matched_fragments": 134, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=MM-124", "accession": "GCA_000622325.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 76.6785, "matched_fragments": 133, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 76.677, "matched_fragments": 101, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius bejariae", "strain": "strain=A21", "accession": "GCA_009669325.1", "taxid": 2576383, "species_taxid": 2576383, "relation_to_type": "type", "validated": true, "ani": 76.6738, "matched_fragments": 125, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 76.6491, "matched_fragments": 113, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 76.6387, "matched_fragments": 129, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagivirga sediminicola", "strain": "strain=BH-SD19", "accession": "GCA_003072125.1", "taxid": 2170575, "species_taxid": 2170575, "relation_to_type": "type", "validated": true, "ani": 76.6322, "matched_fragments": 102, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 76.6278, "matched_fragments": 53, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Primorskyibacter sedentarius", "strain": "strain=DSM 104836", "accession": "GCA_004342065.1", "taxid": 745311, "species_taxid": 745311, "relation_to_type": "type", "validated": true, "ani": 76.6243, "matched_fragments": 124, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium pelagium", "strain": "strain=CGMCC 1.16012", "accession": "GCA_014644355.1", "taxid": 2029103, "species_taxid": 2029103, "relation_to_type": "type", "validated": true, "ani": 76.6203, "matched_fragments": 96, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria atlantica", "strain": "strain=CECT 4292", "accession": "GCA_001458195.1", "taxid": 81569, "species_taxid": 81569, "relation_to_type": "suspected-type", "validated": true, "ani": 76.5962, "matched_fragments": 114, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagimonas phthalicica", "strain": "strain=DSM 26923", "accession": "GCA_004364805.1", "taxid": 1037362, "species_taxid": 1037362, "relation_to_type": "type", "validated": true, "ani": 76.5182, "matched_fragments": 129, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium atlanticum", "strain": "strain=22II-S11-z10", "accession": "GCA_000671395.1", "taxid": 1461693, "species_taxid": 1461693, "relation_to_type": "type", "validated": true, "ani": 76.4969, "matched_fragments": 122, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 76.4604, "matched_fragments": 82, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius albus", "strain": "strain=CECT 7450", "accession": "GCA_900172335.1", "taxid": 1247867, "species_taxid": 1247867, "relation_to_type": "type", "validated": true, "ani": 76.4373, "matched_fragments": 108, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagicola litoralis", "strain": "strain=CL-ES2", "accession": "GCA_005518135.1", "taxid": 420403, "species_taxid": 420403, "relation_to_type": "type", "validated": true, "ani": 76.4345, "matched_fragments": 97, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 76.4036, "matched_fragments": 128, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita lacus", "strain": "strain=CGMCC 1.12478", "accession": "GCA_014637725.1", "taxid": 1323742, "species_taxid": 1323742, "relation_to_type": "type", "validated": true, "ani": 76.4002, "matched_fragments": 126, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 76.304, "matched_fragments": 98, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia sediminis", "strain": "strain=ZQ172", "accession": "GCA_003990645.1", "taxid": 2497945, "species_taxid": 2497945, "relation_to_type": "type", "validated": true, "ani": 76.2587, "matched_fragments": 132, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=CGMCC 1.7290", "accession": "GCA_900101505.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2447, "matched_fragments": 99, "total_fragments": 1294, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013315265.1", "gtdb_species": "s__Sulfitobacter_F algicola", "ani": 100.0, "matched_fragments": 1292, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_017592335.1", "gtdb_species": "s__Sulfitobacter_F sp017592335", "ani": 82.1927, "matched_fragments": 459, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000154785.2", "gtdb_species": "s__Roseobacter litoralis", "ani": 77.3203, "matched_fragments": 131, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015644665.1", "gtdb_species": "s__Roseobacter sp015644665", "ani": 76.963, "matched_fragments": 135, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001262635.1", "gtdb_species": "s__Aestuariivita boseongensis", "ani": 76.9329, "matched_fragments": 172, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aestuariivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003208435.1", "gtdb_species": "s__Pelagimonas varians", "ani": 76.8591, "matched_fragments": 103, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pelagimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900110775.1", "gtdb_species": "s__Litorimicrobium taeanense", "ani": 76.8338, "matched_fragments": 153, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Litorimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002285415.1", "gtdb_species": "s__Actibacterium pelagium", "ani": 76.7912, "matched_fragments": 100, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900142185.1", "gtdb_species": "s__Lutimaribacter pacificus", "ani": 76.7561, "matched_fragments": 134, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Lutimaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_000158135.1", "gtdb_species": "s__Ruegeria sp000158135", "ani": 76.7414, "matched_fragments": 130, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001969365.1", "gtdb_species": "s__Tateyamaria omphalii_A", "ani": 76.717, "matched_fragments": 146, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tateyamaria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009669325.1", "gtdb_species": "s__Roseovarius bejariae", "ani": 76.6738, "matched_fragments": 125, "total_fragments": 1294, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011965.2", "gtdb_species": "s__Ruegeria_B pomeroyi", "ani": 76.6401, "matched_fragments": 126, "total_fragments": 1294, 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