{ "type": "genome", "identifier": "GCF_013336795.1", "organism": "Alteripontixanthobacter muriae", "title": "Alteripontixanthobacter muriae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF THE BASQUE COUNTRY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013336795.1", "bioproject": "PRJNA224116", "biosample": "SAMN13973121", "wgs_master": "JAAFZT000000000.1", "refseq_category": "reference genome", "taxid": "2705546", "species_taxid": "2705546", "organism_name": "Alteripontixanthobacter muriae", "infraspecific_name": "strain=SALINAS58", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/12", "asm_name": "ASM1333679v1", "asm_submitter": "UNIVERSITY OF THE BASQUE COUNTRY", "gbrs_paired_asm": "GCA_013336795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/336/795/GCF_013336795.1_ASM1333679v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2863572", "genome_size_ungapped": "2862014", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013336795.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2832", "protein_coding_gene_count": "2726", "non_coding_gene_count": "49", "pubmed_id": "33666546" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-12", "dateModified": "2020-06-12", "datePublished": "2020-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteripontixanthobacter muriae" ], "sample_taxid": [ "2705546" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain:Salinas de Anana, Alava" ], "sample_host_location_id": [], "data_size": "0.807 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2863572", "Number of Sequences": "56", "Longest Sequences (bp)": "579015", "N50 (bp)": "191540", "Gap Ratio (%)": "0.054408", "GCcontent (%)": "61.4", "Number of CDSs": "2742", "Average Protein Length": "305.1", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 78.4296, "matched_fragments": 313, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter sediminis", "strain": "strain=KCTC 42453", "accession": "GCA_009828115.1", "taxid": 1689985, "species_taxid": 1689985, "relation_to_type": "type", "validated": true, "ani": 78.1711, "matched_fragments": 285, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 78.0999, "matched_fragments": 239, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, "species_taxid": 2867241, "relation_to_type": "type", "validated": true, "ani": 78.088, "matched_fragments": 256, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 78.0873, "matched_fragments": 292, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 78.0839, "matched_fragments": 343, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 78.0394, "matched_fragments": 299, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania lutimaris", "strain": "strain=S-5", "accession": "GCA_003363135.1", "taxid": 1538146, "species_taxid": 1538146, "relation_to_type": "type", "validated": true, "ani": 77.9913, "matched_fragments": 274, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania seohaensis", "strain": "strain=SW-135", "accession": "GCA_002795865.1", "taxid": 266951, "species_taxid": 266951, "relation_to_type": "type", "validated": true, "ani": 77.9867, "matched_fragments": 265, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus hydrothermalis", "strain": "strain=JLT1", "accession": "GCA_022378335.1", "taxid": 2867964, "species_taxid": 2867964, "relation_to_type": "type", "validated": true, "ani": 77.977, "matched_fragments": 246, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=DSM 21428", "accession": "GCA_001461885.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 77.9738, "matched_fragments": 271, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania lutimaris", "strain": "strain=CECT 8624", "accession": "GCA_014191645.1", "taxid": 1538146, "species_taxid": 1538146, "relation_to_type": "type", "validated": true, "ani": 77.9683, "matched_fragments": 275, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania algicida", "strain": "strain=KEMB 9005-328", "accession": "GCA_009828025.1", "taxid": 1836209, "species_taxid": 1836209, "relation_to_type": "type", "validated": true, "ani": 77.957, "matched_fragments": 238, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marensis", "strain": "strain=KCTC 22370", "accession": "GCA_001028625.1", "taxid": 543877, "species_taxid": 543877, "relation_to_type": "type", "validated": true, "ani": 77.9285, "matched_fragments": 272, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania vesicularis", "strain": "strain=1NDH10", "accession": "GCA_019711415.1", "taxid": 2867232, "species_taxid": 2867232, "relation_to_type": "type", "validated": true, "ani": 77.8914, "matched_fragments": 263, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 77.8779, "matched_fragments": 293, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 77.8237, "matched_fragments": 293, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 77.7829, "matched_fragments": 277, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allopontixanthobacter confluentis", "strain": "strain=KCTC 52259", "accession": "GCA_009827615.1", "taxid": 1849021, "species_taxid": 1849021, "relation_to_type": "type", "validated": true, "ani": 77.7729, "matched_fragments": 271, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 77.772, "matched_fragments": 307, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania soli", "strain": "strain=6D36", "accession": "GCA_015529805.1", "taxid": 2782568, "species_taxid": 2782568, "relation_to_type": "type", "validated": true, "ani": 77.754, "matched_fragments": 257, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus bisphenolivorans", "strain": "strain=H4", "accession": "GCA_001634625.1", "taxid": 1783232, "species_taxid": 1783232, "relation_to_type": "type", "validated": true, "ani": 77.742, "matched_fragments": 237, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium mercuriale", "strain": "strain=Coronado", "accession": "GCA_000802385.1", "taxid": 1572751, "species_taxid": 1572751, 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"ani": 77.5277, "matched_fragments": 221, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium marinum", "strain": "strain=CGMCC 1.12918", "accession": "GCA_014640055.1", "taxid": 1514948, "species_taxid": 1514948, "relation_to_type": "type", "validated": true, "ani": 77.2492, "matched_fragments": 235, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 77.0954, "matched_fragments": 195, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013336795.1", "gtdb_species": "s__Pseudopontixanthobacter muriae", "ani": 100.0, "matched_fragments": 932, 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