{ "type": "genome", "identifier": "GCF_013340305.1", "organism": "Desulfovibrio psychrotolerans", "title": "Desulfovibrio psychrotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Subsurface Microbiology Research Group, Horonobe Research Institute for the Subsurface Environment (H-RISE), Northern Advancement Centre for Science and Technology (NOASTEC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013340305.1", "bioproject": "PRJNA224116", "biosample": "SAMD00212907", "wgs_master": "BLVP00000000.1", "refseq_category": "reference genome", "taxid": "415242", "species_taxid": "415242", "organism_name": "Desulfovibrio psychrotolerans", "infraspecific_name": "strain=JS1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/08", "asm_name": "ASM1334030v1", "asm_submitter": "Subsurface Microbiology Research Group, Horonobe Research Institute for the Subsurface Environment (H-RISE), Northern Advancement Centre for Science and Technology (NOASTEC)", "gbrs_paired_asm": "GCA_013340305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/340/305/GCF_013340305.1_ASM1334030v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3789173", "genome_size_ungapped": "3788813", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013340305.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "3330", "protein_coding_gene_count": "3243", "non_coding_gene_count": "67", "pubmed_id": "33588983" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-08", "dateModified": "2020-06-08", "datePublished": "2020-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfovibrio psychrotolerans" ], "sample_taxid": [ "415242" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "1.064 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3789173", "Number of Sequences": "47", "Longest Sequences (bp)": "876440", "N50 (bp)": "370338", "Gap Ratio (%)": "0.009501", "GCcontent (%)": "59.3", "Number of CDSs": "3341", "Average Protein Length": "326.7", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfovibrio psychrotolerans", "strain": "strain=JS1", "accession": "GCA_013340305.1", "taxid": 415242, "species_taxid": 415242, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1246, "total_fragments": 1247, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Desulfovibrio subterraneus", "strain": "strain=HN2", "accession": "GCA_013340285.1", "taxid": 2718620, "species_taxid": 2718620, "relation_to_type": "type", "validated": true, "ani": 79.7118, "matched_fragments": 621, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 77.9101, "matched_fragments": 260, "total_fragments": 1247, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.937, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.062, "bacillus_cell_shape": 0.464, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.535, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Desulfovibrio", "psychrotolerans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }