{
    "type": "genome",
    "identifier": "GCF_013340925.1",
    "organism": "Azospirillum formosense",
    "title": "Azospirillum formosense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UFRGS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013340925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN13025563",
        "wgs_master": "WHOR00000000.1",
        "refseq_category": "na",
        "taxid": "861533",
        "species_taxid": "861533",
        "organism_name": "Azospirillum formosense",
        "infraspecific_name": "strain=CC-NFb-7",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/12",
        "asm_name": "ASM1334092v1",
        "asm_submitter": "UFRGS",
        "gbrs_paired_asm": "GCA_013340925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/340/925/GCF_013340925.1_ASM1334092v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6161078",
        "genome_size_ungapped": "6161078",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "569",
        "contig_count": "569",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_013340925.1-RS_2024_05_12",
        "annotation_date": "2024-05-12",
        "total_gene_count": "5979",
        "protein_coding_gene_count": "5716",
        "non_coding_gene_count": "94",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-12",
    "dateModified": "2020-06-12",
    "datePublished": "2020-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Azospirillum formosense"
        ],
        "sample_taxid": [
            "861533"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Taiwan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.699 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6161078",
        "Number of Sequences": "569",
        "Longest Sequences (bp)": "100233",
        "N50 (bp)": "19405",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.6",
        "Number of CDSs": "5404",
        "Average Protein Length": "307.5",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "83",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1762,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Azospirillum brasilense",
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                "species_taxid": 192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1888,
                "matched_fragments": 1615,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Azospirillum brasilense",
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                "validated": true,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Azospirillum brasilense",
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                "validated": true,
                "ani": 95.1304,
                "matched_fragments": 1581,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Azospirillum brasilense",
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                "ani": 95.1294,
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            },
            {
                "organism_name": "Azospirillum baldaniorum",
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                "accession": "GCA_000237365.1",
                "taxid": 1064539,
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                "relation_to_type": "type",
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                "status": "below_threshold"
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            {
                "organism_name": "Azospirillum baldaniorum",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum argentinense",
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                "accession": "GCA_000632475.2",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum tabaci",
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                "accession": "GCA_014596085.1",
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                "species_taxid": 2752310,
                "relation_to_type": "type",
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                "ani": 94.1373,
                "matched_fragments": 1534,
                "total_fragments": 1784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azospirillum cavernae",
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                "accession": "GCA_003590795.1",
                "taxid": 2320860,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0906,
                "matched_fragments": 856,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenibaculum pallidiluteum",
                "strain": "strain=SYSU D00532",
                "accession": "GCA_017355985.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Elioraea tepida",
                "strain": "strain=MS-P2",
                "accession": "GCA_019203965.1",
                "taxid": 2843330,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0759,
                "matched_fragments": 216,
                "total_fragments": 1784,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Azospirillales;f__Azospirillaceae;g__Azospirillum",
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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        ]
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    "_bac2feature": {
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}