{
    "type": "genome",
    "identifier": "GCF_013343135.1",
    "organism": "Achromobacter xylosoxidans",
    "title": "Achromobacter xylosoxidans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "US Food and Drug Administration",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_013343135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11056504",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "85698",
        "species_taxid": "85698",
        "organism_name": "Achromobacter xylosoxidans",
        "infraspecific_name": "strain=FDAARGOS_789",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/15",
        "asm_name": "ASM1334313v1",
        "asm_submitter": "US Food and Drug Administration",
        "gbrs_paired_asm": "GCA_013343135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/343/135/GCF_013343135.1_ASM1334313v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6806438",
        "genome_size_ungapped": "6806438",
        "gc_percent": "67.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-18",
        "total_gene_count": "6291",
        "protein_coding_gene_count": "6175",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-15",
    "dateModified": "2020-06-15",
    "datePublished": "2020-06-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Achromobacter xylosoxidans"
        ],
        "sample_taxid": [
            "85698"
        ],
        "sample_host_organism": [
            "unknown"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown",
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany: Braunschweig"
        ],
        "sample_host_location_id": [],
        "data_size": "1.847 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6806438",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "6806438",
        "N50 (bp)": "6806438",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.4",
        "Number of CDSs": "6251",
        "Average Protein Length": "327.9",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "10",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Achromobacter xylosoxidans",
                "strain": "strain=FDAARGOS_789",
                "accession": "GCA_013343135.1",
                "taxid": 85698,
                "species_taxid": 85698,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2268,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Achromobacter xylosoxidans",
                "strain": "strain=NCTC10807",
                "accession": "GCA_001457475.1",
                "taxid": 85698,
                "species_taxid": 85698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9989,
                "matched_fragments": 2266,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Achromobacter xylosoxidans",
                "strain": "strain=PartM-Axylosoxidans-RM8376",
                "accession": "GCA_022870085.1",
                "taxid": 85698,
                "species_taxid": 85698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9979,
                "matched_fragments": 2267,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Achromobacter xylosoxidans",
                "strain": "strain=NBRC 15126",
                "accession": "GCA_001598595.1",
                "taxid": 85698,
                "species_taxid": 85698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9757,
                "matched_fragments": 2224,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Achromobacter insuavis",
                "strain": "strain=LMG 26845",
                "accession": "GCA_902859645.1",
                "taxid": 1287735,
                "species_taxid": 1287735,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.5219,
                "matched_fragments": 1749,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Achromobacter insolitus",
                "strain": "strain=NCTC 13520",
                "accession": "GCA_024168865.1",
                "taxid": 217204,
                "species_taxid": 217204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1659,
                "matched_fragments": 1457,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella bronchiseptica",
                "strain": "strain=CCUG 219",
                "accession": "GCA_021391275.1",
                "taxid": 518,
                "species_taxid": 518,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.0881,
                "matched_fragments": 904,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eoetvoesia caeni",
                "strain": "strain=PB3-7B",
                "accession": "GCA_022688825.1",
                "taxid": 645616,
                "species_taxid": 645616,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4905,
                "matched_fragments": 394,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus numazuensis",
                "strain": "strain=LMG 26411",
                "accession": "GCA_905397435.1",
                "taxid": 221992,
                "species_taxid": 221992,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7121,
                "matched_fragments": 580,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001457475.1",
                "gtdb_species": "s__Achromobacter xylosoxidans",
                "ani": 99.9989,
                "matched_fragments": 2266,
                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "96.70",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 75,
                "status": "conclusive"
            },
            {
                "accession": "GCF_902859695.1",
                "gtdb_species": "s__Achromobacter ruhlandii",
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                "matched_fragments": 1829,
                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0063,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "97.95",
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                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_902859745.1",
                "gtdb_species": "s__Achromobacter dolens",
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                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0063,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_902859645.1",
                "gtdb_species": "s__Achromobacter insuavis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
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                "mean_intra_species_ani": "99.48",
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                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_016127315.1",
                "gtdb_species": "s__Achromobacter insuavis_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
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                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "97.13",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_902859765.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
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                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 30.5,
        "optimum_tmp": 29.833,
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        "gc_content": 66.656,
        "coding_genes": 5975.6,
        "rRNA16S_genes": 3.0,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
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        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Achromobacter",
        "xylosoxidans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}