{ "type": "genome", "identifier": "GCF_013359825.1", "organism": "Curtobacterium citreum", "title": "Curtobacterium citreum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Indigo Agriculture", "publication": [ {} ], "properties": { "assembly_accession": "GCF_013359825.1", "bioproject": "PRJNA224116", "biosample": "SAMN14931888", "wgs_master": "JABMCG000000000.1", "refseq_category": "na", "taxid": "2036", "species_taxid": "2036", "organism_name": "Curtobacterium citreum", "infraspecific_name": "strain=DSM 20512", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/18", "asm_name": "ASM1335982v1", "asm_submitter": "Indigo Agriculture", "gbrs_paired_asm": "GCA_013359825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/013/359/825/GCF_013359825.1_ASM1335982v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3674993", "genome_size_ungapped": "3674993", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "127", "contig_count": "127", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_013359825.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "3593", "protein_coding_gene_count": "3483", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-18", "dateModified": "2020-06-18", "datePublished": "2020-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Curtobacterium citreum" ], "sample_taxid": [ "2036" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.972 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3674993", "Number of Sequences": "127", "Longest Sequences (bp)": "436559", "N50 (bp)": "88436", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.9", "Number of CDSs": "3462", "Average Protein Length": "315.2", "Coding Ratio (%)": "89.1", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Curtobacterium albidum", "strain": "strain=DSM 20512", "accession": "GCA_013359825.1", "taxid": 50728, "species_taxid": 50728, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1173, "total_fragments": 1176, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=LMG8786T", "accession": "GCA_024997915.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 97.3567, "matched_fragments": 1031, "total_fragments": 1176, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=JCM 1345", "accession": "GCA_014646735.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 97.3211, "matched_fragments": 1029, "total_fragments": 1176, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=DSM 20528", "accession": "GCA_006715175.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 97.3111, "matched_fragments": 1032, "total_fragments": 1176, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Curtobacterium pusillum", "strain": "strain=ATCC 19096", "accession": "GCA_013359865.1", "taxid": 69373, "species_taxid": 69373, "relation_to_type": "suspected-type", "validated": true, "ani": 85.9764, "matched_fragments": 822, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium luteum", "strain": "strain=JCM 1480", "accession": "GCA_014646995.1", "taxid": 33881, "species_taxid": 33881, "relation_to_type": "type", "validated": true, "ani": 85.8511, "matched_fragments": 866, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium luteum", "strain": "strain=ATCC 15830", "accession": "GCA_013359885.1", "taxid": 33881, "species_taxid": 33881, "relation_to_type": "type", "validated": true, "ani": 85.8014, "matched_fragments": 872, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium allii", "strain": "strain=20TX0166", "accession": 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